Berbagai Paket Software Dalam Ubuntu 11.04 Natty Bagian Science

Software Packages in "natty", Subsection science

Dalam Ubuntu 11.04 Natty terdapat ratusan paket software yang siap diunduh. Kita tinggal milih bagiannya, lalu pilih software yang kita perlukan. Setelah tahu namanya maka kita masuk ke terminal (Command Line Interface) untuk siap menginstall:

 

Contoh, ketik di terminal: sudo apt-get install abinit [Enter], maka langsung akan diinstall.

3depict (0.0.2-1) [universe]

visualisation and analysis for single valued point data

abinit (5.3.4.dfsg-3build1) [universe]

A package for electronic structure calculations

abinit-doc (5.3.4.dfsg-3build1) [universe]

A package for electronic structure calculations

acedb-other (4.9.39+dfsg.01-2) [universe]

retrieval of DNA or protein sequences

acedb-other-belvu (4.9.39+dfsg.01-2) [universe]

multiple sequence alignment editor

acedb-other-dotter (4.9.39+dfsg.01-2) [universe]

visualisation of sequence similarity

achilles (2-8) [universe]

An artificial life and evolution simulator

adun.app (0.81-4build1) [universe]

Molecular Simulator for GNUstep

aeskulap (0.2.2b1-7ubuntu1) [universe]

medical image viewer and DICOM network client

algotutor (0.8.6-1) [universe]

program for observing the intermediate steps of algorithm

alien-hunter (1.7-1) [universe]

Interpolated Variable Order Motifs to identify horizontally acquired DNA

altree (1.0.1-4) [universe]

program to perform phylogeny-based association and localization analysis

altree-examples (1.0.1-4) [universe]

example files for ALTree

amap-align (2.2-1) [universe]

Protein multiple alignment by sequence annealing

ants (1.9+svn532-5) [universe]

advanced normalization tools for brain and image analysis

apbs (1.2.1b-1) [universe]

Adaptive Poisson Boltzmann Solver

astronomical-almanac (5.6-3) [universe]

astronomical almanac - calculate planet and star positions

autodock (4.2.3-1) [universe]

analysis of ligand binding to protein structure

autodock-test (4.2.3-1) [universe]

test files for AutoDock

autodocktools (1.5.4.cvs.20100912-2ubuntu1) [multiverse]

GUI to help set up, launch and analyze AutoDock dockings

autogrid (4.2.3-1) [universe]

pre-calculate binding of ligands to their receptor

autogrid-test (4.2.3-1) [universe]

test files for AutoGrid

avce00 (2.0.0-2) [universe]

Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.

avida-base (2.0b7-4.2ubuntu2) [universe]

Auto-adaptive genetic system for Artificial Life research

avida-qt-viewer (2.0b7-4.2ubuntu2) [universe]

qt viewer for avida

avida-viewer (2.0b7-4.2ubuntu2) [universe]

ncurses viewer for avida

avogadro (1.0.1-3.2ubuntu2) [universe]

Molecular Graphics and Modelling System

avogadro-data (1.0.1-3.2ubuntu2)

Molecular Graphics and Modelling System (Data Files)

ballview (1.3.2-2ubuntu3) [universe]

A free molecular modeling and molecular graphics tool

bauble (0.9.7-2) [universe]

biodiversity collection manager software application

bibus (1.5.1-3) [universe]

bibliographic database

biococoa.app (1.6.0-8build2) [universe]

biological sequence file format conversion applet for GNUstep

bioperl (1.6.1-2) [universe]

Perl tools for computational molecular biology

bioperl-run (1.6.1-1) [universe]

Wrapper modules for BioPerl

biosquid (1.9g+cvs20050121-2) [universe]

utilities for biological sequence analysis

bist (0.5.1-1) [universe]

chemical drawing tool

bkchem (0.13.0-2) [universe]

Chemical structures editor

blast2 (1:2.2.21.20090809-2) [universe]

Basic Local Alignment Search Tool

blinken (4:4.6.2-0ubuntu2) [universe]

KDE version of the Simon electronic memory game

bodr (9-1) [universe]

Blue Obelisk Data Repository

boinc-app-milkyway (0.18d-1) [universe]

Milkyway@home application for the BOINC client

boinc-app-seti (5.13+cvs20060510-7) [universe]

SETI@home application for the BOINC client

boolector (1.4.ffc2089.100608-1) [universe]

SMT solver for bit-vectors and arrays

boxshade (3.3.1-4) [universe]

Pretty-printing of multiple sequence alignments

bwa (0.5.8c-1) [universe]

Burrows-Wheeler Aligner

caret (5.6.1.3~dfsg.1-4ubuntu1) [universe]

Computerized Anatomical Reconstruction and Editing Toolkit

cassbeam (1.0-8) [universe]

A program for Cassegrain antenna modelling

cba (0.3.6-4) [universe]

Continuous Beam Analysis

cbflib-bin (0.7.9.1-3) [universe]

utilities to manipulate CBF files

celestia-common (1.6.0+dfsg-2) [universe]

Datafiles for Celestia, a real-time visual space simulation

celestia-common-nonfree (1.6.0-1) [multiverse]

Non-free datafiles for Celestia, a real-time visual space simulation

celestia-glut (1.6.0+dfsg-2) [universe]

A real-time visual space simulation (GLUT frontend)

cernlib (2006.dfsg.2-14.1) [universe]

CERNLIB data analysis suite - general use metapackage

cernlib-core (2006.dfsg.2-14.1) [universe]

CERNLIB data analysis suite - main libraries and programs

cernlib-core-dev (2006.dfsg.2-14.1) [universe]

CERNLIB data analysis suite - core development files

cernlib-extras (2006.dfsg.2-14.1) [universe]

CERNLIB data analysis suite - extra programs

cernlib-montecarlo (2006.dfsg.2-5ubuntu3) [universe]

CERNLIB Monte Carlo libraries

cgns-convert (2.5.4-3) [universe]

CFD General Notation System - Conversion tools

chemical-structures (2.1.dfsg.1-10) [universe]

A set of molecular structures in open formats

chemtool (1.6.12-1ubuntu1) [universe]

Chemical structures drawing program

clustalw (2.1-1) [multiverse]

global multiple nucleotide or peptide sequence alignment

clustalw-mpi (0.15-1) [multiverse]

MPI-distributed global sequence alignment with ClustalW

clustalx (2.1-1) [multiverse]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

code-aster-gui (1.8.3-2) [universe]

Graphical user interface for Code_Aster - client

code-aster-run (1.8.3-2) [universe]

Graphical user interface for Code_Aster - server

code-saturne (2.0.0.rc1-5) [universe]

General purpose Computational Fluid Dynamics (CFD) software

code-saturne-bin (2.0.0.rc1-5) [universe]

General purpose Computational Fluid Dynamics (CFD) software - binaries

code-saturne-data (2.0.0.rc1-5) [universe]

General purpose Computational Fluid Dynamics (CFD) software - data

code-saturne-include (2.0.0.rc1-5) [universe]

General purpose Computational Fluid Dynamics (CFD) software - includes

coinor-csdp (6.1.1-1) [universe]

A software package for semidefinite programming

coinor-libcgl0 (0.55.0-1ubuntu1) [universe]

Cut Generator Library, a library of cutting-plane generators

coinor-libclp0 (1.12.0-2) [universe]

Coin-or linear programming solver

coinor-libclp0-dbg (1.12.0-2) [universe]

Coin-or linear programming solver

coinor-libcoinutils0 (2.6.4-3) [universe]

Coin-or collection of utility classes

coinor-libcoinutils0-dbg (2.6.4-3) [universe]

Coin-or collection of utility classes

coinor-libdylp0 (1.6.0-1) [universe]

Linear programming solver using the dynamic simplex algorithm

coinor-libflopc++0 (1.0.6-3) [universe]

Formulation of Linear Optimization Problems in C++

coinor-libosi0 (0.103.0-1) [universe]

COIN-OR Open Solver Interface

coinor-libsymphony0 (5.2.4-1ubuntu1) [universe]

COIN-OR solver for mixed-integer linear programs

coinor-libvol0 (1.1.7-1) [universe]

Coin-or linear programming solver

complearn-gui (1.0.7-2ubuntu1) [universe]

interactive 3d data mining tool and demo for universal machine learning

complearn-tools (1.1.7-1) [universe]

complearn machine-learning command-line utilities

critterding (1.0-beta12.1-1) [universe]

Evolving Artificial Life

ctsim (5.2.0-1) [universe]

Computed tomography simulator

ctsim-help (5.2.0-1) [universe]

Online help file for CTSim

dans-gdal-scripts (0.16-3) [universe]

GDAL contributed tools by Geographic Information Network of Alaska

dcmtk (3.6.0-1ubuntu1) [universe]

The OFFIS DICOM toolkit command line utilities

dialign (2.2.1-3) [universe]

Segment-based multiple sequence alignment

dialign-tx (1.0.2-1) [universe]

Segment-based multiple sequence alignment

dialign-tx-data (1.0.2-1) [universe]

Common data files for dialign-tx

dicomnifti (2.28.15-1) [universe]

converts DICOM files into the NIfTI format

drawmap (2.5-3) [universe]

draws customized maps, using raw USGS data files

drawxtl (5.4+dfsg-5) [universe]

crystal structure viewer

dsdp (5.8-8) [universe]

Software for Semidefinite Programming

dx (1:4.4.4-3build3) [universe]

OpenDX (IBM Visualization Data Explorer) - main package

dxsamples (4.2.0-1) [universe]

Sample programs for the OpenDX Data Explorer

e00compr (1.0.1-1) [universe]

a program to read/write Arc/Info compressed E00 files

easychem (0.6-6) [universe]

Draw high-quality molecules and 2D chemical formulas

ecs (2.0.0.rc1-3) [universe]

Code_Saturne Preprocessor

edfbrowser (1.30-1) [universe]

a viewer for biosignal storage files such as bdf and edf

eficas (2.0.3-1-1) [universe]

Graphical editor for Code Aster command files

elmer (5.5.0.svn.4897.dfsg-1ubuntu1) [universe]

finite element multiphysics suite - binaries

elmer-common (5.5.0.svn.4897.dfsg-1ubuntu1) [universe]

finite element multiphysics suite - architecture-independent files

embassy-domainatrix (0.1.0+20100721-2) [universe]

Extra EMBOSS commands to handle domain classification file

embassy-domalign (0.1.0+20100721-2) [universe]

Extra EMBOSS commands for protein domain alignment

embassy-domsearch (0.1.0++20100721-2) [universe]

Extra EMBOSS commands to search for protein domains

embassy-phylip (3.69+20100721-2) [multiverse]

EMBOSS conversions of the programs in the phylip package

emboss (6.3.1-6) [universe]

the european molecular biology open software suite

emboss-data (6.3.1-6) [universe]

data files for the EMBOSS package

emboss-explorer (2.2.0-7) [universe]

web-based GUI to EMBOSS

engauge-digitizer (4.1-2) [universe]

interactively extracts numbers from bitmap graphs or maps

ent (1.1debian-1.1) [universe]

pseudorandom number sequence test program

epigrass (2.0.4-1) [universe]

scientific tool for simulations and scenario analysis in network epidemiology

eprover (1.0.004-1ubuntu1) [universe]

Theorem prover for first-order logic with equality

eprover-doc-html (1.0.004-1ubuntu1) [universe]

Theorem prover for first-order logic with equality - HTML doc

eprover-examples (1.0.004-1ubuntu1) [universe]

Theorem prover for first-order logic with equality - examples

epsilon-bin (0.8.1-1) [universe]

A library for wavelet image compression - tools

etsf-io (1.0.3-3ubuntu1) [universe]

Binary tools to check, merge and read ETSF files

exonerate (2.2.0-2) [universe]

generic tool for pairwise sequence comparison

extrema (4.4.5.dfsg-1) [universe]

powerful visualization and data analysis tool

fastdnaml (1.2.2-9) [universe]

Tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix95-1) [universe]

A faster version of pedigree programs of Linkage

fastlink-doc (4.1P-fix95-1) [universe]

Some papers about fastlink

feel++-apps (0.91.0~svn7013-1) [universe]

A library for the finite element method

fityk (0.9.3-1) [universe]

general-purpose nonlinear curve fitting and data analysis

freecad (0.10.3247.dfsg-2ubuntu3) [universe]

An extensible Open Source CAx program (alpha)

freediams (0.5.4-1) [universe]

Pharmaceutical drugs prescriptor and interactions checker

freediams-data (0.5.4-1) [universe]

Data for pharmaceutical drugs prescriptor and interactions checker FreeDiams

fsl (4.1.6-4) [multiverse]

Metapackage for the latest version of FSL

fsl-4.1 (4.1.6-4) [multiverse]

analysis tools for FMRI, MRI and DTI brain imaging

fslview (3.1.8+4.1.6-2build1) [universe]

viewer for (f)MRI and DTI data

fslview-doc (3.1.8+4.1.6-2build1) [universe]

Documentation for FSLView

g3data (1:1.5.3-2) [universe]

extract data from scanned graphs

gabedit (2.2.12-1) [universe]

graphical user interface to Ab Initio packages

gamgi (0.15-3ubuntu3) [universe]

General Atomistic Modelling Graphic Interface (GAMGI)

gamgi-data (0.15-3ubuntu3) [universe]

General Atomistic Modelling Graphic Interface (data)

garlic (1.6-1) [universe]

A visualization program for biomolecules

gausssum (2.2.4-1) [universe]

parse and display Gaussian, GAMESS, and etc's output

gchempaint (0.12.7-1ubuntu1) [universe]

2D chemical structures editor for the GNOME2 desktop

gcrystal (0.12.7-1ubuntu1) [universe]

lightweight crystal structures visualizer

gcu-bin (0.12.7-1ubuntu1) [universe]

GNOME chemistry utils (helper applications)

gcu-plugin (0.12.7-1ubuntu1) [universe]

GNOME chemistry utils (browser plugin)

gdal-bin (1.6.3-4build3) [universe]

Geospatial Data Abstraction Library - Utility programs

gdis (0.90-3) [universe]

molecular and crystal model viewer

gdis-data (0.90-3) [universe]

molecular and crystal model viewer (data files)

gdpc (2.2.5-1) [universe]

visualiser of molecular dynamic simulations

gdpc-examples (2.2.5-1) [universe]

example files for the gdpc program

geant321 (1:3.21.14.dfsg-8ubuntu2) [universe]

[Physics] Particle detector description and simulation tool

geant321-data (1:3.21.14.dfsg-8ubuntu2) [universe]

[Physics] Data for GEANT 3.21 detector simulator

gelemental (1.2.0-6ubuntu1) [universe]

Periodic Table viewer

gelemental-dbg (1.2.0-6ubuntu1) [universe]

Periodic Table viewer (main application debugging symbols)

genesis (2.2.1-12ubuntu2) [universe]

general-purpose neural simulator

genesis-data (2.2.1-12ubuntu2) [universe]

scripts and documentation for genesis

gentle (1.9+cvs20100605+dfsg-2) [multiverse]

suite to plan genetic cloning

geographiclib-tools (1.2-1) [universe]

A C++ library to solve some geodesic problems -- tools

geotiff-bin (1.2.5-1) [universe]

the GeoTIFF library -- tools

gerris-mpi (20091109-dfsg.1-2) [universe]

Gerris Flow Solver

gff2aplot (2.0-5) [universe]

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98d-3) [universe]

produces PostScript graphical output from GFF-files

ghkl (4.0.3-2) [universe]

diffractometer computation control library

glam2 (1064-1) [universe]

gapped protein motifs from unaligned sequences

gmap (2010-07-27-1) [multiverse]

spliced and SNP-tolerant alignment for mRNA and short reads

gmt (4.5.2-1build1) [universe]

Generic Mapping Tools

gmt-doc-pdf (4.5.2-1build1) [universe]

PDF docs for GMT, the Generic Mapping Tools

gmt-tutorial (3.4-1.1) [universe]

Data files needed to reproduce the tutorial examples of GMT

gmt-tutorial-pdf (4.5.2-1build1) [universe]

Tutorial for GMT, the Generic Mapping Tools (PDF)

gperiodic (2.0.10-5) [universe]

periodic table application

gpib-modules-source (3.2.11-0.2ubuntu6) [universe]

kernel modules for various GPIB boards

gpiv (0.6.1-2) [universe]

GUI program for Particle Image Velocimetry

gpiv-mpi (0.6.1-2) [universe]

GUI program for Particle Image Velocimetry - MPI version

gpivtools (0.6.0-1build1) [universe]

command line programs for Particle Image Velocimetry

gpivtools-mpi (0.6.0-1build1) [universe]

command line programs for Particle Image Velocimetry - MPI version

gpx2shp (0.69-3) [universe]

convert GPS or GPX file to ESRI Shape file

grads (2.0.a8-2ubuntu1) [universe]

Grid Analysis and Display System for earth science data

grass (6.4.0~rc6+42329-3build1) [universe]

Geographic Resources Analysis Support System

grass-doc (6.4.0~rc6+42329-3build1) [universe]

Geographic Resources Analysis Support System documentation

grass-doc

virtual package provided by grass-doc

gri (2.12.22-1) [universe]

a language for scientific illustration

gri-el (2.12.22-1) [universe]

Emacs major-mode for gri, a language for scientific graphics

gromacs (4.5.3-1ubuntu1) [universe]

Molecular dynamics simulator, with building and analysis tools

gromacs-data (4.5.3-1ubuntu1) [universe]

GROMACS molecular dynamics sim, data and documentation

gromacs-lam (4.5.3-1ubuntu1) [universe]

Transition package to gromacs-openmpi

gromacs-mpich (4.5.3-1ubuntu1) [universe]

Molecular dynamics sim, binaries for MPICH parallelization

gromacs-openmpi (4.5.3-1ubuntu1) [universe]

Molecular dynamics sim, binaries for OpenMPI parallelization

gvb (1.2.1-1) [universe]

visual simulator of 1 and 2-dimensional vibrations

gwyddion (2.22-1) [universe]

Scanning Probe Microscopy visualization and analysis tool

gwyddion-common (2.22-1) [universe]

architecture-independent files for Gwyddion SPM analysis tool

gwyddion-plugins (2.22-1) [universe]

plugins for Gwyddion SPM analysis tool

h5utils (1.12.1-1) [universe]

HDF5 files visualization tools

harminv (1.3.1-7) [universe]

extraction of complex frequencies and amplitudes from time series

harpia (1.1-0ubuntu1) [universe]

Image Processing/Computer Vision Automatic Prgm. Tool

hdf5-tools (1.8.4-patch1-2ubuntu3) [universe]

Hierarchical Data Format 5 (HDF5) - Runtime tools

hmmer (3.0-3) [universe]

profile hidden Markov models for protein sequence analysis

hodie (1.4-8) [universe]

prints the date in latin

horae (071~svn533-1) [multiverse]

interactive graphical processing and analysis of EXAFS data

hpcc (1.4.1-1) [universe]

HPC Challenge benchmark

ifeffit (2:1.2.11d-6build1) [multiverse]

An interactive program for XAFS analysis

ifrit (3.3.2-1) [universe]

a powerful tool for visualizing 3-dimensional data sets

igv (1.5.21-1) [multiverse]

Integrative Genomics Viewer

imagej (1.44i-1) [universe]

Image processing program inspired by NIH Image for the Macintosh

imview (1.1.9c-7build1) [universe]

Image viewing and analysis application

infernal (1.0.2-1) [universe]

inference of RNA secondary structural alignments

israndom (1.0.7-3ubuntu1) [universe]

nonclassical randomness test using data compressors

itksnap (2.0.0+cvs20100615-1) [universe]

semi-automatic segmentation of structures in 3D images

jblas (1.1.1-2) [universe]

A fast linear algebra library for Java

jemboss (6.3.1-6) [universe]

graphical user interface to EMBOSS

kalign (2.04-2) [universe]

Global and progressive multiple sequence alignment

kalzium (4:4.6.2-0ubuntu2)

periodic table and chemistry tools for KDE

kalzium-data (4:4.6.2-0ubuntu2)

data files for Kalzium

kstars (4:4.6.2-0ubuntu2)

desktop planetarium for KDE

kstars-data (4:4.6.2-0ubuntu2)

data files for KStars desktop planetarium

kxterm (2006.dfsg.2-14.1) [universe]

CERNLIB data analysis suite - KUIP terminal emulator

last-align (146-1) [universe]

genome-scale comparison of biological sequences

libball1.3 (1.3.2-2ubuntu3) [universe]

Biochemical Algorithms Library

libballview1.3 (1.3.2-2ubuntu3) [universe]

Biochemical Algorithms Library, VIEW framework

libbio-ruby (1.4.1-1) [universe]

bioruby tools for computational molecular biology

libbio-ruby1.8 (1.4.1-1) [universe]

bioruby tools for computational molecular biology

libbiojava-java (1:1.7.1-1) [universe]

Java API to biological data and applications

libbiojava-java-demos (1:1.7.1-1) [universe]

Example programs for BioJava

libbiojava1.7-java (1:1.7.1-1) [universe]

Java API to biological data and applications

libgeotiff-epsg (1.2.5-1) [multiverse]

the GeoTIFF library -- EPSG Geodetic Parameter Dataset

libghemical-data (2.99.1-1) [universe]

Molecular Modelling Library (data files)

libgpib-bin (3.2.11-0.2ubuntu6) [universe]

libgpib support applications and configuration

libgrib-api-data (1.8.0.1-1) [universe]

grib_api definition files

libhkl4 (4.0.3-2) [universe]

diffractometer computation control library

liblas-bin (1.2.1-2) [universe]

ASPRS LiDAR data translation toolset

liblinear-tools (1.6+dfsg-1) [universe]

Standalone applications for LIBLINEAR

libnecpp-dev (1.5.0+cvs20101003-2ubuntu1) [universe]

development files for libnecpp

libnecpp0 (1.5.0+cvs20101003-2ubuntu1) [universe]

library to use NEC2++

libocas-tools (0.93-1) [universe]

Standalone applications implementing the OCAS solver

libopenmeeg1 (2.0.0.dfsg-2build2) [universe]

library for solving EEG and MEG forward and inverse problems

libqgis1.4.0 (1.4.0+12730-5ubuntu1) [universe]

Quantum GIS - shared libraries

libstxxl1 (1.3.0-1) [universe]

C++ STL drop-in replacement for extremely large datasets

libworldwind-java (0.5.0-8) [multiverse]

3D Virtual Globe

libxy-bin (0.6-1) [universe]

xylib - utilities

lipsia (1.6.0-4ubuntu1) [universe]

analysis suite for MRI and fMRI data

loki (2.4.7.4-4) [universe]

MCMC linkage analysis on general pedigrees

loki-doc (2.4.7.4-4) [universe]

Postscript manual for loki

lutefisk (1.0.5a.cleaned-1) [universe]

de novo interpretation of peptide CID spectra

mafft (6.833-1) [universe]

Multiple alignment program for amino acid or nucleotide sequences

maq (0.7.1-3) [universe]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

massxpert (2.4.0-1ubuntu1) [universe]

linear polymer mass spectrometry software

massxpert-data (2.4.0-1ubuntu1) [universe]

linear polymer mass spectrometry software - arch-indep data

mayavi2 (3.4.0-1) [universe]

A scientific visualization package for 2-D and 3-D data

meep (1.1.1-6) [universe]

software package for FDTD simulation

meep-mpi (1.1.1-6) [universe]

software package for FDTD simulation, parallel (mpich) version

meep-mpich (1.1.1-9) [universe]

software package for FDTD simulation, parallel (mpich) version

meep-openmpi (1.1.1-7) [universe]

software package for FDTD simulation, parallel (OpenMPI) version

melting (4.3c-1) [universe]

compute the melting temperature of nucleic acid duplex

melting-gui (4.3c-1) [universe]

graphical interface to compute the melting temperature of nucleic acid duplex

merkaartor (0.17.2-1) [universe]

map editor for OpenStreetMap.org

mgltools-bhtree (1.5.4.cvs.20100912-1build1) [multiverse]

Bhtree library extension module

mgltools-dejavu (1.5.4.cvs.20100912-1) [multiverse]

visualization of 3D geometry using the OpenGL with Python

mgltools-geomutils (1.5.4.cvs.20100912-1build1) [multiverse]

Python library for geometric analyses

mgltools-mglutil (1.5.4.cvs.20100912-1) [multiverse]

Molecular Graphics Laboratory utility collection

mgltools-molkit (1.5.4.cvs.20100912-1) [multiverse]

Python classes to read and manipulate molecules

mgltools-networkeditor (1.5.4.cvs.20100912-1) [multiverse]

Python GUI library for the editing of networks

mgltools-opengltk (1.5.4.cvs.20100912-1build1) [multiverse]

opengltk python extension

mgltools-pmv (1.5.4.cvs.20100912-2) [multiverse]

Python-based Molecular Viewer

mgltools-pyautodock (1.5.4.cvs.20100912-1) [multiverse]

Python implementation of autodock

mgltools-pybabel (1.5.4.cvs.20100912-1) [multiverse]

molecular structure file access and interpretation

mgltools-pyglf (1.5.4.cvs.20100912-1build1) [multiverse]

GLF library Python extension to write text in OpenGL

mgltools-scenario (1.5.4.cvs.20090514-1) [multiverse]

Python-based viewer of molecular structures

mgltools-sff (1.5.4.cvs.20100912-1build1) [multiverse]

Simple Force Field for Python

mgltools-support (1.5.4.cvs.20100912-1) [multiverse]

Update mechanism of MGLTools

mgltools-symserv (1.5.4.cvs.20100912-1) [multiverse]

Symetry server

mgltools-utpackages (1.5.4.cvs.20100912-1.1) [multiverse]

UT Austin software Python extensions

mgltools-viewerframework (1.5.4.cvs.20100912-1ubuntu1) [multiverse]

ViewerFramework supports building visualization applications

mgltools-vision (1.5.4.cvs.20100912-1ubuntu1) [multiverse]

Python-based Visual Programming Environment

mgltools-volume (1.5.4.cvs.20100912-1) [multiverse]

Volume rendering Python package

minc-tools (2.1.00-1) [universe]

MNI medical image format tools

minisat2 (1:2.2.0-2) [universe]

Fast and lightweight SAT solver

mipe (1.1-3) [universe]

Tools to store PCR-derived data

mitools (1.8.1-3ubuntu1) [universe]

view, convert and perform basic maths with medical image datasets

mmass (3.9.0-1ubuntu1) [universe]

Mass spectrometry tool for proteomics

mn-fit (5.13-7) [universe]

interactive analysis package for fitting data and histograms

mn-fit-common (5.13-7) [universe]

common files for Mn_Fit

molphy (2.3b3-5) [multiverse]

Program Package for MOLecular PHYlogenetics

montecarlo-base (2006.dfsg.2-5ubuntu3) [universe]

[Physics] Common files for CERNLIB Monte Carlo libraries

montecarlo-data (2006.dfsg.2-5ubuntu3) [universe]

[Physics] data for CERNLIB Monte Carlo libraries

mopac7-bin (1.15-4) [universe]

Semi-empirical Quantum Chemistry Library (binaries)

mpb (1.4.2-16) [universe]

MIT Photonic-Bands

mpb-mpi (1.4.2-16) [universe]

MIT Photonic-Bands, parallel (mpich) version

mpqc (2.3.1-6) [universe]

The Massively Parallel Quantum Chemistry Program

mpqc-openmpi (2.3.1-6) [universe]

The Massively Parallel Quantum Chemistry Program (OpenMPI Version)

mpqc-support (2.3.1-6) [universe]

Support programs and tools for MPQC

mriconvert (2.0-2) [universe]

medical image file conversion utility

mricron (0.20101102.1~dfsg.1-1) [universe]

magnetic resonance image conversion, viewing and analysis

mricron-data (0.20101102.1~dfsg.1-1) [universe]

data files for MRIcron

mrpt-apps (1:0.9.4-1ubuntu1) [universe]

Mobile Robot Programming Toolkit - Console and GUI applications

mrpt-libs (1:0.9.4-1ubuntu1) [universe]

Mobile Robot Programming Toolkit - All the libraries

mrtrix (0.2.8-3) [universe]

diffusion-weighted MRI white matter tractography

mssstest (3.0-2) [multiverse]

Normalisation of disease scores for patients with Multiple Sclerosis

mummer (3.22~dfsg-2) [universe]

Efficient sequence alignment of full genomes

muscle (3.70+fix1-2) [universe]

Multiple alignment program of protein sequences

music-bin (1.0.7-1) [universe]

Multi-Simulation Coordinator for MPI -- Utilities

mustang (3.2.1-1) [universe]

multiple structural alignment of proteins

mustang-testdata (3.2.1-1) [universe]

multiple structural alignment of proteins, test data

narval-generic-actors (1.10.2-2) [universe]

An Ada framework for Distributed Acquisition Systems (generic actors)

narval-servers (1.10.2-2) [universe]

An Ada framework for Distributed Acquisition Systems (servers)

narval-tests-actors (1.10.2-2) [universe]

An Ada framework for Distributed Acquisition Systems (tests actors)

narval-utils (1.10.2-2) [universe]

An Ada framework for Distributed Acquisition Systems (utils)

ncbi-epcr (2.3.12-1) [universe]

Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-rrna-data (6.1.20090809-2) [universe]

large rRNA BLAST databases distributed with the NCBI toolkit

ncbi-tools-bin (6.1.20090809-2) [universe]

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20090809-2) [universe]

NCBI libraries for biology applications (X-based utilities)

ncoils (2002-1) [universe]

[Biology] coiled coil secondary structure prediction

ncview (1.93g-1build1) [universe]

A X11 visual browser for NetCDF format files

necpp (1.5.0+cvs20101003-2ubuntu1) [universe]

NEC2 Evolution Antenna Modelling System

netcdf-bin (1:4.1.1-5build1) [universe]

Programs for reading and writing NetCDF files

njplot (2.3-3) [universe]

A phylogenetic tree drawing program

oasis3 (3.3.beta.dfsg.1-5) [universe]

Coupler for exchanging fields between components of Earth system models

oasis3-examples (3.3.beta.dfsg.1-5) [universe]

Example models for the OASIS climate model coupler

objcryst-fox (1.9.0.2-1) [universe]

Free Objects for Xtallography

odin (1.8.1-3ubuntu1) [universe]

develop, simulate and run magnetic resonance sequences

ogdi-bin (3.2.0~beta2-6) [universe]

Open Geographic Datastore Interface Library -- utilities

openbabel (2.2.3-1build2) [universe]

Chemical toolbox utilities

opencascade-draw (6.3.0.dfsg.1-6) [universe]

OpenCASCADE CAE platform shared library

opencascade-wok (6.3.0.dfsg.1-6) [universe]

OpenCASCADE CAE platform shared library

openjump (1.0-4) [multiverse]

Open Java Unified Mapping Platform JUMP

openmeeg-tools (2.0.0.dfsg-2build2) [universe]

tools for solving EEG and MEG forward and inverse problems

openmx (3.2.4.dfsg-3build1) [universe]

Package for nano-scale material simulations

openrocket (1.1.3-3) [universe]

Model Rocket Simulator

openturns-examples (0.13.2-8) [universe]

examples of OpenTURNS functionalities

openturns-validation (0.13.2-8) [universe]

validation files for OpenTURNS

openturns-wrapper (0.13.2-8) [universe]

example of a wrapper for OpenTURNS

openuniverse (1.0beta3.1+dfsg-1build1) [universe]

3D Universe Simulator

openuniverse-common (1.0beta3.1+dfsg-1build1) [universe]

3D Universe Simulator data files

opj2dat (20080225-2ubuntu1) [universe]

OriginLab Origin project files to data files converter

opticalraytracer (2.8-2) [universe]

A virtual lens design workshop

origami (0.7.4-1) [universe]

command-line management tool for Folding @ Home clients

ossim-core (1.7.21-1build1) [universe]

The OSSIM core utilities

ovito (0.9.2-1build1) [universe]

visualization and analysis tool for atomistic simulation data

paje.app (1.97+cvs20080110-2build3) [universe]

generic visualization tool (Gantt chart and more)

paraview (3.8.1-2ubuntu3) [universe]

Parallel Visualization Application

paw (1:2.14.04.dfsg.2-7) [universe]

Physics Analysis Workstation - a graphical analysis program

paw++ (1:2.14.04.dfsg.2-7) [universe]

Physics Analysis Workstation (Lesstif-enhanced version)

paw-common (1:2.14.04.dfsg.2-7) [universe]

Physics Analysis Workstation (common files)

paw-demos (1:2.14.04.dfsg.2-7) [universe]

Physics Analysis Workstation examples and tests

perlprimer (1.1.19-1) [universe]

Graphical design of primers for PCR

perlprimer-doc (1.1.19-1) [universe]

Tutorial to perlprimer

php5-gpib (3.2.11-0.2ubuntu6) [universe]

libgpib PHP5 bindings

phylip (1:3.69-1) [multiverse]

package of programs for inferring phylogenies

phylip-doc (1:3.69-1) [multiverse]

package of programs for inferring phylogenies

phyml (2:20100123-1) [universe]

Phylogenetic estimation using Maximum Likelihood

picard-tools (1.27-1) [universe]

Command line tools to manipulate SAM and BAM files

picosat (936-1) [universe]

SAT solver with proof and core support

planets (0.1.13-11) [universe]

Gravitation simulation of planetary bodies

plink (1.07-1) [universe]

whole-genome association analysis toolset

poa (2.0+20060928-2) [universe]

Partial Order Alignment for multiple sequence alignment

praat (5.2.3-1) [universe]

program for speech analysis and synthesis

primer3 (2.2.3-1) [universe]

Tool to design flanking oligo nucleotides for DNA amplification

probcons (1.12-7) [universe]

PROBabilistic CONSistency-based multiple sequence alignment

probcons-extra (1.12-7) [universe]

Extra programs from the probcons package

proda (1.0-7) [universe]

multiple alignment of protein sequences

proj (4.7.0-1) [universe]

Cartographic projection filter and library (transitional package)

proj-bin (4.7.0-1) [universe]

Cartographic projection library (tools)

psi3 (3.4.0-2) [universe]

Quantum Chemical Program Suite

psychopy (1.61.03.dfsg-1) [universe]

environment for creating psychology stimuli in Python

pymca (4.4.1p1-1ubuntu1) [universe]

Python applications and toolkit for X-ray fluorescence analysis

pymca-data (4.4.1p1-1ubuntu1) [universe]

Architecture independent data files for PyMca

pymol (1.2r2-1.1build1) [universe]

Molecular Graphics System

python-ifeffit (2:1.2.11d-6build1) [multiverse]

Python GUI interface and extensions for IFEFFIT

python-necpp (1.5.0+cvs20101003-2ubuntu1) [universe]

Python module for using NEC2++

python-nifti (0.20100607.1-2build1) [universe]

Python interface to the NIfTI I/O libraries

python-pyepl (1.1.0-3build2) [universe]

module for coding psychology experiments in Python

python-pyepl-common (1.1.0-3build2) [universe]

module for coding psychology experiments in Python

python-pyode (1.2.0-4+cvs20090320build1) [universe]

Python bindings for The Open Dynamics Engine

qfits-tools (6.2.0-2) [universe]

FITS manipulation tools

qgis (1.4.0+12730-5ubuntu1) [universe]

Geographic Information System (GIS)

qgis-common (1.4.0+12730-5ubuntu1) [universe]

Quantum GIS - architecture-independent data

qgis-plugin-grass (1.4.0+12730-5ubuntu1) [universe]

GRASS plugin for Quantum GIS

qgis-plugin-grass-common (1.4.0+12730-5ubuntu1) [universe]

GRASS plugin for Quantum GIS - architecture-independent data

qmc (0.94-3build1) [universe]

Quine McClusky Simplification Tool

qsearch-tools (1.0.8-3) [universe]

qsearch machine-learning command-line utilities

qtdmm (0.8.13-3) [universe]

GUI for digital multimeter

r-cran-colorspace (1.0.1-1build1) [universe]

GNU R Color Space Manipulation

r-cran-epibasix (1.1-2) [universe]

GNU R Elementary Epidemiological Functions

r-cran-genetics (1.3.4-1) [universe]

GNU R package for population genetics

r-cran-haplo.stats (1.4.4-1) [universe]

GNU R package for haplotype analysis

r-cran-maptools (1:0.7-38-1) [multiverse]

GNU R Tools for reading and handling spatial objects

r-cran-msm (1.0-1) [universe]

GNU R Multi-state Markov and hidden Markov models in continuous time

r-cran-qvalue (1.24.0-1) [universe]

GNU R package for Q-value estimation for FDR control

r-cran-randomforest (4.5-36-1) [universe]

GNU R package implementing the random forest classificator

r-cran-sp (1:0.9-73-1) [universe]

GNU R classes and methods for spatial data

r-cran-spc (1:0.3-1) [universe]

GNU R Statistical Process Control

r-cran-surveillance (1.2-1-1) [multiverse]

development and the evaluation of epidemiological outbreak detection algorithms

r-cran-vcd (1:1.2-9-1) [universe]

GNU R Visualizing Categorical Data

r-cran-xtable (1:1.5-6-1) [universe]

GNU R coerce data to LaTeX and HTML tables

r-other-bio3d (1.1-0-1) [universe]

GNU R package for biological structure analysis

rasmol (2.7.5-2) [universe]

Visualize biological macromolecules

rasmol-doc (2.7.5-2) [universe]

Documentation for rasmol

raster3d (2.9-2-1) [multiverse]

tools for generating images of proteins or other molecules

readseq (1-8) [universe]

[Biology] Conversion between sequence formats

rnahybrid (2.1-2) [universe]

Fast and effective prediction of microRNA/target duplexes

robot-player (3.0.2+dfsg-2ubuntu1) [universe]

Networked server for robots and sensors

robot-player-dev (3.0.2+dfsg-2ubuntu1) [universe]

Networked server for robots and sensors - development package

robot-player-doc (3.0.2+dfsg-2ubuntu1) [universe]

Networked server for robots and sensors (documentation)

rocs (4:4.6.2-0ubuntu2)

graph theory IDE

saga (2.0.4+dfsg-2) [universe]

System for Automated Geoscientific Analyses

salome (5.1.3-12ubuntu1) [universe]

Numerical simulation pre- and post-processor

salome-common (5.1.3-12ubuntu1) [universe]

Numerical simulation pre- and post-processor

salome-extras (5.1.3-12ubuntu1) [universe]

Numerical simulation pre- and post-processor

samtools (0.1.12a-1ubuntu1) [universe]

processing sequence alignments in SAM and BAM formats

sat4j (2.2.0-3) [universe]

Efficient library of SAT solvers in Java

science-machine-learning (0.12) [universe]

Debian Science Machine Learning packages

science-nanoscale-physics (0.12) [universe]

Debian Science Nanoscale Physics packages

science-nanoscale-physics-dev (0.12) [universe]

Debian Science Nanoscale Physics development packages

seaview (1:4.2.10-1) [multiverse]

Multiplatform interface for sequence alignment and phylogeny

seesat5 (0.90.10-1.1) [universe]

a satellite location program

sextractor (2.4.4-1) [universe]

source extractor for astronomical images

shogun-cmdline (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-dbg (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-elwms (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-octave (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-octave-modular (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-python (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-python-modular (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

shogun-r (0.9.3-4ubuntu9) [universe]

Large Scale Machine Learning Toolbox

sibsim4 (0.20-1) [universe]

align expressed RNA sequences on a DNA template

sigma-align (1.1.3-1) [universe]

Simple greedy multiple alignment of non-coding DNA sequences

sim4 (0.0.20030921-3) [universe]

tool for aligning cDNA and genomic DNA

sixpack (1:0.66-3ubuntu1) [multiverse]

full-featured package for XAS analysis

slang-xfig (0.2.0~.35-1) [universe]

produce plots and drawings through Xfig's fig2dev in S-Lang

spass (3.7-2) [universe]

An automated theorem prover for first-order logic with equality

spatialite-bin (2.4.0~rc2-5) [universe]

Geospatial extension for SQLite - tools

ssake (3.7-1) [universe]

genomics application for assembling millions of very short DNA sequences

ssake-examples (3.7-1) [universe]

example data for SSAKE, a genomic assembler of short reads

staden-io-lib-utils (1.12.4-1) [universe]

programs for maniuplating DNA sequencing files

stardata-common (0.7) [universe]

Common framework to manage astronomy packages

starplot (0.95.5-4) [universe]

3-dimensional perspective star map viewer

stellarium (0.10.5-1) [universe]

real-time photo-realistic sky generator

stellarium-data (0.10.5-1) [universe]

Stellarium data files

survex (1.1.14-1) [universe]

cave surveying and mapping software

survex-aven (1.1.14-1) [universe]

sophisticated cave survey viewer for Survex

survex-svxedit (1.1.14-1) [universe]

survey data editor for Survex

syrthes (3.4.2-dfsg1-3) [universe]

Transient thermal simulations in complex solid geometries

t-coffee (8.84-1) [universe]

Multiple Sequence Alignment

t-coffee-doc (8.84-1) [universe]

PDF and HTML accompaning documents to T-Coffee

t-coffee-examples (8.84-1) [universe]

annotated examples for the use of T-Coffee

tcd-utils (20061127-2) [universe]

convert Tide Constituent Database (TCD) files

tessa (0.3.1-4ubuntu4) [universe]

simulation of 3D optical systems with the FDTD method

tessa-mpi (0.3.1-4ubuntu4) [universe]

simulation of 3D optical systems using FDTD on LAM-MPI clusters

therion (5.3.3-1ubuntu1) [universe]

Cave surveying - 2D and 3D drawing software

therion-doc (5.3.3-1ubuntu1) [universe]

Documentation for Therion Cave surveying software

therion-viewer (5.3.3-1ubuntu1) [universe]

Cave surveying - 3D viewer for therion models

theseus (1.5.5-1) [universe]

superimpose macromolecules using maximum likelihood

tigr-glimmer (3.02-2) [universe]

Gene detection in archea and bacteria

transcalc (0.14-5) [universe]

microwave and RF transmission line calculator

tree-ppuzzle (5.2-6) [universe]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.2-6) [universe]

Reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle-doc (5.2-6) [universe]

Reconstruction of phylogenetic trees by maximum likelihood

treeviewx (0.5.1-7) [universe]

Displays and prints phylogenetic trees

triangle-bin (1.6-2) [multiverse]

High-quality 2-D mesh generator binary programs

tunnelx (20090624-2) [universe]

Cave Survey drawing software

ugene (1.9.1+repack-0ubuntu1) [universe]

integrated bioinformatics toolkit

ugene-data (1.9.1+repack-0ubuntu1) [universe]

required data for UGENE - integrated bioinformatics toolkit

units-filter (3.1-2) [universe]

Parser for expressions concerning physical values

v-sim (3.5.2-1) [universe]

Visualize atomic structures

v-sim-common (3.5.2-1) [universe]

Visualize atomic structures (support files)

v-sim-plugins (3.5.2-1) [universe]

Plugins for V_Sim (a 3D visualization package)

velvet (1.0.15~nozlibcopy-2) [universe]

Nucleic acid sequence assembler for very short reads

velvet-example (1.0.15~nozlibcopy-2) [universe]

Example data for the Velvet sequence assembler

viewmol (2.4.1-17build1) [universe]

A graphical front end for computational chemistry programs.

vmtk (0.9.0-2) [multiverse]

the Vascular Modeling Toolkit

vowpal-wabbit (5.0-1ubuntu1) [universe]

fast and scalable online machine learning algorithm

voxbo (1.8.5~svn1172-1) [universe]

processing, statistical analysis, and display of brain imaging data

weka (3.6.0-3) [universe]

Machine learning algorithms for data mining tasks

wise (2.4.1-8) [universe]

comparison of biopolymers, commonly DNA and protein sequences

worldwind (0.5.0-8) [multiverse]

3D Virtual Globe

xbs (0-8) [universe]

3-d models and movies of molecules

xdrawchem (1.9.9-5) [universe]

Chemical structures and reactions editor

xfoil (6.97.dfsg-3) [universe]

program for the design and analysis of subsonic airfoils

xmakemol (5.16-5ubuntu1) [universe]

A program for visualizing atomic and molecular systems

xmds (1.6.6-4) [universe]

eXtensible Multi-Dimensional Simulator

xorsa (0.7.0-15) [universe]

tool for Celestial Mechanics investigations

xplot (1.19-9build1) [universe]

simple on-screen x-y column data plotter

xplot-xplot.org (0.90.7.1-2) [universe]

fast tool to graph and visualize lots of data

xtide (2.11-1) [universe]

provides tide and current predictions

xtide-coastline (20020202-1) [universe]

coastline data for xtide

xtide-data (20100529-1) [universe]

Harmonics data for xtide

xtide-data-nonfree (20100529-1) [multiverse]

Harmonics data for xtide (Canada, Netherlands, Germany and UK)

ygraph (0.16~cvs20090218-1ubuntu1) [universe]

plot and animate data sets

yorick-mira (0.9.9+dfsg1-2) [universe]

optical intreferometry image reconstruction within Yorick

yorick-mpy-common (2.1.06+dfsg-2ubuntu1) [universe]

Message Passing Yorick (common files)

yorick-mpy-mpich2 (2.1.06+dfsg-2ubuntu1) [universe]

Message Passing Yorick (MPICH2 build)

yorick-mpy-openmpi (2.1.06+dfsg-2ubuntu1) [universe]

Message Passing Yorick (OpenMPI build)

z88 (13.0.0+dfsg2-1) [universe]

Finite Element Analysis Program - runtime

zimpl (3.1.0+dfsg-1) [universe]

mathematical modeling language for optimization problems

zygrib (3.9.2-1) [universe]

Weather data visualization, GRIB file viewer

zygrib-maps (3.9.2-1) [universe]

Maps for zyGrib weather visualization