Sabtu, 15 Oktober 2011

Links for Science-Chemistry

Berikut  ini daftar software kimia yang termasuk dalam paket Ubuntu 11.10 oneiric.

Package: science-chemistry (0.13ubuntu3)[universe]

Links science-chemistry

Download Source Package debian-science:
Tanda:
  • dep: depends
  • rec: recommends
  • sug: suggests
  • dep:
    science-config
    (= 0.13ubuntu3)
    Debian Science Project config package

  • dep:
    science-tasks
    (= 0.13ubuntu3)
    Debian Science tasks for tasksel

  • rec:
    adun.app
    Molecular Simulator for GNUstep

  • rec:
    apbs
    Adaptive Poisson Boltzmann Solver

  • rec:
    avogadro
    Molecular Graphics and Modelling System

  • rec:
    bkchem
    Chemical structures editor

  • rec:
    bodr
    Blue Obelisk Data Repository

  • rec:
    chemeq
    Parser for chemical formula and equilibria

  • rec:
    chemical-mime-data
    chemical MIME and file type support for desktops

  • rec:
    chemical-structures
    set of molecular structures in open formats

  • rec:
    chemtool
    Chemical structures drawing program

  • rec:
    drawxtl
    crystal structure viewer

  • rec:
    easychem
    Draw high-quality molecules and 2D chemical formulas

  • rec:
    gabedit
    graphical user interface to Ab Initio packages

  • rec:
    galculator
    A GTK+ 2.0 based calculator

  • rec:
    gamgi
    General Atomistic Modelling Graphic Interface (GAMGI)

  • rec:
    garlic
    A visualization program for biomolecules

  • rec:
    gausssum
    parse and display Gaussian, GAMESS, and etc's output

  • rec:
    gchempaint
    2D chemical structures editor for the GNOME2 desktop

  • rec:
    gcrystal
    lightweight crystal structures visualizer

  • rec:
    gcu-bin
    GNOME chemistry utils (helper applications)

  • rec:
    gcu-plugin
    GNOME chemistry utils (browser plugin)

  • rec:
    gdis
    molecular and crystal model viewer

  • rec:
    gdpc
    visualiser of molecular dynamic simulations

  • rec:
    gelemental
    Periodic Table viewer

  • rec:
    ghemical
    A GNOME molecular modelling environment

  • rec:
    gperiodic
    periodic table application

  • rec:
    gromacs
    Molecular dynamics simulator, with building and analysis tools
    or
    gromacs-mpich
    Molecular dynamics sim, binaries for MPICH parallelization
    or
    gromacs-openmpi
    Molecular dynamics sim, binaries for OpenMPI parallelization

  • rec:
    jmol
    Molecular Viewer

  • rec:
    kalzium
    periodic table and chemistry tools for KDE

  • rec:
    katomic
    atomix puzzle game

  • rec:
    libcdk-java
    Chemistry Development Kit (CDK) Java libraries

  • rec:
    massxpert
    linear polymer mass spectrometry software

  • rec:
    mopac7-bin
    Semi-empirical Quantum Chemistry Library (binaries)

  • rec:
    mpqc
    The Massively Parallel Quantum Chemistry Program

  • rec:
    mpqc-support
    Support programs and tools for MPQC

  • rec:
    openbabel
    Chemical toolbox utilities (cli)

  • rec:
    pdb2pqr
    Preparation of protein structures for electrostatics calculations

  • rec:
    psi3
    Quantum Chemical Program Suite

  • rec:
    pymol
    Molecular Graphics System

  • rec:
    python-openbabel
    Chemical toolbox library (python bindings)

  • rec:
    qutemol
    Package not available

  • rec:
    rasmol
    Visualize biological macromolecules

  • rec:
    v-sim
    Visualize atomic structures

  • rec:
    viewmol
    A graphical front end for computational chemistry programs.

  • rec:
    xbs
    3-d models and movies of molecules

  • rec:
    xdrawchem
    Chemical structures and reactions editor

  • rec:
    xmakemol-gl
    Package not available
    or
    xmakemol
    A program for visualizing atomic and molecular systems

  • sug:
    cp2k
    Package not available

  • sug:
    gdpc-examples
    example files for the gdpc program

  • sug:
    gromacs-lam
    Package not available

  • sug:
    libegad
    Package not available

  • sug:
    libint
    Package not available

  • sug:
    molden
    Package not available

  • sug:
    molekel
    Package not available

  • sug:
    openchrom
    Package not available

  • sug:
    polyxmass
    Package not available

  • sug:
    tinker
    Package not available

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Paket Software Sains dalam Ubuntu 11.10 Oneiric

Software Packages in "oneiric", Subsection science


3depict (0.0.6-1) [universe]
visualisation and analysis for single valued point data
abacas (1.3.1-1) [universe]
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (5.3.4.dfsg-3build2) [universe]
A package for electronic structure calculations
abinit-doc (5.3.4.dfsg-3build2) [universe]
A package for electronic structure calculations
acedb-other (4.9.39+dfsg.01-3) [universe]
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-3) [universe]
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-3) [universe]
visualisation of sequence similarity
achilles (2-8) [universe]
An artificial life and evolution simulator
adun.app (0.81-5) [universe]
Molecular Simulator for GNUstep
aeskulap (0.2.2b1-7ubuntu1.1) [universe]
medical image viewer and DICOM network client
algotutor (0.8.6-1) [universe]
program for observing the intermediate steps of algorithm
alien-hunter (1.7-1) [universe]
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.0.1-4build1) [universe]
program to perform phylogeny-based association and localization analysis
altree-examples (1.0.1-4build1) [universe]
example files for ALTree
amap-align (2.2-3) [universe]
Protein multiple alignment by sequence annealing
ampliconnoise (1.22-2) [universe]
Programs for the removal of noise from 454 sequenced PCR amplicons
ants (1.9.2+svn680.dfsg-2) [universe]
advanced normalization tools for brain and image analysis
apbs (1.2.1b-1build1) [universe]
Adaptive Poisson Boltzmann Solver
astronomical-almanac (5.6-3) [universe]
astronomical almanac - calculate planet and star positions
autodock (4.2.3-1) [universe]
analysis of ligand binding to protein structure
autodock-test (4.2.3-1) [universe]
test files for AutoDock
autodock-vina (1.1.2-1) [universe]
docking of small molecules to proteins
autodocktools (1.5.6~rc1+cvs.20110617-1) [multiverse]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.3-1) [universe]
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.3-1) [universe]
test files for AutoGrid
avce00 (2.0.0-2) [universe]
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avida-base (2.0b7-4.2ubuntu2) [universe]
Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-4.2ubuntu2) [universe]
qt viewer for avida
avida-viewer (2.0b7-4.2ubuntu2) [universe]
ncurses viewer for avida
avogadro (1.0.3-1ubuntu3) [universe]
Molecular Graphics and Modelling System
avogadro-data (1.0.3-1ubuntu3)
Molecular Graphics and Modelling System (Data Files)
aweather (0.5.1-1) [universe]
Advanced Weather Monitoring Program
bauble (0.9.7-2) [universe]
biodiversity collection manager software application
bedtools (2.12.0-1) [universe]
suite of utilities for comparing genomic features
bibus (1.5.1-3ubuntu1) [universe]
bibliographic database
biococoa.app (1.6.0-8build3) [universe]
biological sequence file format conversion applet for GNUstep
biogenesis (0.8-1) [universe]
artificial life program that simulates evolution of organisms
biomaj (1.1.0-3) [universe]
Biological banks updater
bioperl (1.6.901-1) [universe]
Perl tools for computational molecular biology
bioperl-run (1.6.9-1) [universe]
BioPerl wrappers: scripts
biosig-tools (0.96.3+svn2677-2) [universe]
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-2) [universe]
utilities for biological sequence analysis
bist (0.5.1-1ubuntu1) [universe]
chemical drawing tool
bkchem (0.13.0-3) [universe]
Chemical structures editor
blast2 (1:2.2.24.20100808-2) [universe]
Basic Local Alignment Search Tool
blinken (4:4.7.1-0ubuntu2) [universe]
KDE version of the Simon electronic memory game
bodr (9-1) [universe]
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-1ubuntu1) [universe]
Milkyway@home application for the BOINC client
boinc-app-seti (5.13+cvs20060510-7ubuntu1) [universe]
SETI@home application for the BOINC client
boolector (1.4.ffc2089.100608-1) [universe]
SMT solver for bit-vectors and arrays
bowtie (0.12.7-1) [universe]
ultrafast memory-efficient short read aligner
bowtie-examples (0.12.7-1) [universe]
Examples for bowtie, the ultrafast memory-efficient short read aligner
boxshade (3.3.1-5) [universe]
Pretty-printing of multiple sequence alignments
bppphyview (0.2.0-1) [universe]
Bio++ Phylogenetic Viewer
bppsuite (0.6.2-1) [universe]
Bio++ program suite
bwa (0.5.9-2) [universe]
Burrows-Wheeler Aligner
caret (5.6.4~dfsg.1-1ubuntu1) [universe]
Computerized Anatomical Reconstruction and Editing Toolkit
cba (0.3.6-4) [universe]
Continuous Beam Analysis
cbflib-bin (0.7.9.1-3build1) [universe]
utilities to manipulate CBF files
cbmc (4.0-3) [universe]
bounded model checker for C and C++ programs
celestia-common (1.6.0+dfsg-4) [universe]
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.0-1) [multiverse]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.0+dfsg-4) [universe]
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - main libraries and programs
cernlib-core-dev (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - core development files
cernlib-extras (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-1build1) [universe]
CERNLIB Monte Carlo libraries
cgns-convert (2.5.5-1) [universe]
CFD General Notation System - Conversion tools
chemical-structures (2.2.dfsg.0-5) [universe]
set of molecular structures in open formats
chemtool (1.6.12-1ubuntu1) [universe]
Chemical structures drawing program
clonalframe (1.2-2) [universe]
inference of bacterial microevolution using multilocus sequence data
clustalw (2.1+lgpl-2) [multiverse]
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-1) [multiverse]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-1) [multiverse]
Multiple alignment of nucleic acid and protein sequences (graphical interface)
code-aster-gui (1.8.4-4) [universe]
Graphical user interface for Code_Aster - client
code-aster-run (1.8.4-4) [universe]
Graphical user interface for Code_Aster - server
code-saturne (2.0.2-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (2.0.2-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (2.0.2-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (2.0.2-1) [universe]
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-csdp (6.1.1-1) [universe]
A software package for semidefinite programming
coinor-libcgl0 (0.55.0-1ubuntu1) [universe]
Cut Generator Library, a library of cutting-plane generators
coinor-libclp0 (1.12.0-2) [universe]
Coin-or linear programming solver
coinor-libclp0-dbg (1.12.0-2) [universe]
Coin-or linear programming solver
coinor-libcoinutils0 (2.6.4-3) [universe]
Coin-or collection of utility classes
coinor-libcoinutils0-dbg (2.6.4-3) [universe]
Coin-or collection of utility classes
coinor-libdylp0 (1.6.0-1) [universe]
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0 (1.0.6-3.1) [universe]
Formulation of Linear Optimization Problems in C++
coinor-libosi0 (0.103.0-1) [universe]
COIN-OR Open Solver Interface
coinor-libsymphony0 (5.2.4-1.1ubuntu1) [universe]
COIN-OR solver for mixed-integer linear programs
coinor-libvol0 (1.1.7-1) [universe]
Coin-or linear programming solver
complearn-tools (1.1.7-1) [universe]
complearn machine-learning command-line utilities
critterding (1.0-beta12.1-1ubuntu1) [universe]
Evolving Artificial Life
ctsim (5.2.0-1) [universe]
Computed tomography simulator
ctsim-help (5.2.0-1) [universe]
Online help file for CTSim
dans-gdal-scripts (0.18-1ubuntu1) [universe]
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-6ubuntu1) [universe]
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-5) [universe]
Segment-based multiple sequence alignment
dialign-tx (1.0.2-2) [universe]
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-2) [universe]
Common data files for dialign-tx
dicomnifti (2.28.15-1) [universe]
converts DICOM files into the NIfTI format
dimbl (0.9-1) [universe]
Distributed Memory Based Learner
dotur (1.53-1) [universe]
distance based OTU and richness estimation
drawmap (2.5-3) [universe]
draws customized maps, using raw USGS data files
drawxtl (5.5-1) [universe]
crystal structure viewer
dsdp (5.8-9) [universe]
Software for Semidefinite Programming
dx (1:4.4.4-4) [universe]
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1) [universe]
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2) [universe]
A program to read/write Arcinfo compressed E00 files
easychem (0.6-6) [universe]
Draw high-quality molecules and 2D chemical formulas
ecs (2.0.2-1) [universe]
Code_Saturne Preprocessor
edfbrowser (1.30-1) [universe]
a viewer for biosignal storage files such as bdf and edf
eficas (2.0.3-1-1) [universe]
Graphical editor for Code Aster command files
elastix (4.4-2) [universe]
toolbox for rigid and nonrigid registration of images
elmer (6.1.0.svn.5272.dfsg-1ubuntu2) [universe]
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5272.dfsg-1ubuntu2) [universe]
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.0+20100721-3) [universe]
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.0+20100721-3) [universe]
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (0.1.0++20100721-3) [universe]
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69+20100721-3) [multiverse]
EMBOSS conversions of the programs in the phylip package
emboss (6.3.1-6) [universe]
the european molecular biology open software suite
emboss-data (6.3.1-6) [universe]
data files for the EMBOSS package
emboss-explorer (2.2.0-7) [universe]
web-based GUI to EMBOSS
engauge-digitizer (4.1-2) [universe]
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-1.1) [universe]
pseudorandom number sequence test program
epigrass (2.0.4-1) [universe]
scientific tool for simulations and scenario analysis in network epidemiology
eprover (1.0.004-1ubuntu2) [universe]
Theorem prover for first-order logic with equality
eprover-doc-html (1.0.004-1ubuntu2) [universe]
Theorem prover for first-order logic with equality - HTML doc
eprover-examples (1.0.004-1ubuntu2) [universe]
Theorem prover for first-order logic with equality - examples
epsilon-bin (0.9.1-2) [universe]
A library for wavelet image compression - tools
etsf-io (1.0.3-3ubuntu2) [universe]
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-2) [universe]
generic tool for pairwise sequence comparison
expeyes (1.0.3-4ubuntu1) [universe]
hardware & software framework for developing science experiments
extrema (4.4.5.dfsg-2) [universe]
powerful visualization and data analysis tool
fastdnaml (1.2.2-9) [universe]
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-2) [universe]
A faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix95-2) [universe]
Some papers about fastlink
fastx-toolkit (0.0.13.1-1) [universe]
FASTQ/A short nucleotide reads pre-processing tools
feel++-apps (0.91.0~svn7215-3build1) [universe]
A library for the finite element method
figtree (1.3.1-1) [universe]
graphical phylogenetic tree viewer
fityk (0.9.8-1) [universe]
general-purpose nonlinear curve fitting and data analysis
freecad (0.11.4446-dfsg-2build1) [universe]
Extensible Open Source CAx program (alpha)
freediams (0.5.4-1) [universe]
Pharmaceutical drugs prescriptor and interactions checker
freediams-data (0.5.4-1) [universe]
Data for pharmaceutical drugs prescriptor and interactions checker FreeDiams
fsl (4.1.8-1ubuntu1) [multiverse]
Metapackage for the latest version of FSL
fsl-4.1 (4.1.8-1ubuntu1) [multiverse]
analysis tools for FMRI, MRI and DTI brain imaging
g3data (1:1.5.3-2) [universe]
extract data from scanned graphs
gabedit (2.3.7-1) [universe]
graphical user interface to Ab Initio packages
gamgi (0.15.3-1) [universe]
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.15.3-1) [universe]
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1) [universe]
A visualization program for biomolecules
gausssum (2.2.5-1) [universe]
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.39~dfsg-2) [universe]
The GMOD Generic Genome Browser
gbrowse-calign (2.39~dfsg-2) [universe]
CAlign helper
gbrowse-data (2.39~dfsg-2) [universe]
Sample data to use GBrowse
gchempaint (0.12.8-1ubuntu3) [universe]
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.12.8-1ubuntu3) [universe]
lightweight crystal structures visualizer
gcu-bin (0.12.8-1ubuntu3) [universe]
GNOME chemistry utils (helper applications)
gcu-plugin (0.12.8-1ubuntu3) [universe]
GNOME chemistry utils (browser plugin)
gcx (1.3-1) [universe]
astronomical image processing and photometry gtk+ application
gdal-bin (1.7.3-5ubuntu1) [universe]
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-3) [universe]
molecular and crystal model viewer
gdis-data (0.90-3) [universe]
molecular and crystal model viewer (data files)
gdpc (2.2.5-1ubuntu1) [universe]
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-1ubuntu1) [universe]
example files for the gdpc program
geant321 (1:3.21.14.dfsg-9build1) [universe]
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-9build1) [universe]
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-6ubuntu1) [universe]
Periodic Table viewer
gelemental-dbg (1.2.0-6ubuntu1) [universe]
Periodic Table viewer (main application debugging symbols)
genesis (2.2.1-12ubuntu3) [universe]
general-purpose neural simulator
genesis-data (2.2.1-12ubuntu3) [universe]
scripts and documentation for genesis
gentle (1.9+cvs20100605+dfsg-3) [multiverse]
suite to plan genetic cloning
geographiclib-tools (1.8-2) [universe]
A C++ library to solve some geodesic problems -- tools
geotiff-bin (1.2.5-1) [universe]
the GeoTIFF library -- tools
gerris-mpi (20110329-dfsg.2-1build1) [universe]
Gerris Flow Solver
gff2aplot (2.0-6) [universe]
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-3) [universe]
produces PostScript graphical output from GFF-files
ghkl (4.0.3-4) [universe]
diffractometer computation control application
ginkgocadx (2.5.1.0-1) [universe]
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-1) [universe]
gapped protein motifs from unaligned sequences
gmap (2011-03-11-1) [multiverse]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (4.5.6-1) [universe]
Generic Mapping Tools
gmt-doc-pdf (4.5.6-1) [universe]
PDF docs for GMT, the Generic Mapping Tools
gmt-tutorial (3.4-1.1) [universe]
Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-pdf (4.5.6-1) [universe]
Tutorial for GMT, the Generic Mapping Tools (PDF)
gofigure2 (0.8.1-2) [universe]
Tool for visualizing, processing and analysing of bioimages
gperiodic (2.0.10-5) [universe]
periodic table application
gpib-modules-source (3.2.11-0.2ubuntu7) [universe]
kernel modules for various GPIB boards
gpiv (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2) [universe]
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-1build1) [universe]
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-1build1) [universe]
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.69-3) [universe]
convert GPS or GPX file to ESRI Shape file
grads (2.0.a9-1) [universe]
Grid Analysis and Display System for earth science data
grass (6.4.1-1build1) [universe]
Geographic Resources Analysis Support System
grass-doc (6.4.1-1build1) [universe]
Geographic Resources Analysis Support System documentation
gri (2.12.23-2) [universe]
a language for scientific illustration
gri-el (2.12.23-2) [universe]
Emacs major-mode for gri, a language for scientific graphics
gromacs (4.5.4-2) [universe]
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.5.4-2) [universe]
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (4.5.4-2) [universe]
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.5.4-2) [universe]
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2.1-1) [universe]
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.24-1ubuntu1) [universe]
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.24-1ubuntu1) [universe]
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.24-1ubuntu1) [universe]
plugins for Gwyddion SPM analysis tool
h5utils (1.12.1-1ubuntu1) [universe]
HDF5 files visualization tools
harminv (1.3.1-7build1) [universe]
extraction of complex frequencies and amplitudes from time series
harpia (1.1-0ubuntu1) [universe]
Image Processing/Computer Vision Automatic Prgm. Tool
hdf5-tools (1.8.4-patch1-2ubuntu4) [universe]
Hierarchical Data Format 5 (HDF5) - Runtime tools
hmmer (3.0-3) [universe]
profile hidden Markov models for protein sequence analysis
hodie (1.5-1) [universe]
prints the date in latin
horae (071~svn536-1) [multiverse]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.1-2) [universe]
HPC Challenge benchmark
ifeffit (2:1.2.11d-7build1) [multiverse]
Interactive XAFS analysis program
ifrit (3.3.4-2build1) [universe]
powerful tool for visualizing 3-dimensional data sets
igv (2.0.6-1) [multiverse]
Integrative Genomics Viewer
imagej (1.45k-1) [universe]
Image processing program inspired by NIH Image for the Macintosh
imview (1.1.9c-7ubuntu1) [universe]
Image viewing and analysis application
indi (0.8-0ubuntu1)
INDI server, drivers, and examples
infernal (1.0.2-1) [universe]
inference of RNA secondary structural alignments
israndom (1.0.7-4) [universe]
nonclassical randomness test using data compressors
itksnap (2.2.0-1build1) [universe]
semi-automatic segmentation of structures in 3D images
jblas (1.2.0-2build1) [universe]
A fast linear algebra library for Java
jemboss (6.3.1-6) [universe]
graphical user interface to EMBOSS
jmol (12.0.40-1ubuntu1) [universe]
Molecular Viewer
kalign (1:2.03+20110620-1) [universe]
Global and progressive multiple sequence alignment
kalzium (4:4.7.1-0ubuntu3)
periodic table and chemistry tools for KDE
kalzium-data (4:4.7.1-0ubuntu3)
data files for Kalzium
klustakwik (2.0.1-1) [universe]
automatic sorting of the samples (spikes) into clusters
kstars (4:4.7.1-0ubuntu2)
desktop planetarium for KDE
kstars-data (4:4.7.1-0ubuntu2)
data files for KStars desktop planetarium
kxterm (20061220+dfsg3-2) [universe]
CERNLIB data analysis suite - KUIP terminal emulator
last-align (178-1) [universe]
genome-scale comparison of biological sequences
libbio-ruby (1.4.1-1) [universe]
bioruby tools for computational molecular biology
libbio-ruby1.8 (1.4.1-1) [universe]
bioruby tools for computational molecular biology
libbiojava-java (1:1.7.1-1) [universe]
Java API to biological data and applications
libbiojava-java-demos (1:1.7.1-1) [universe]
Example programs for BioJava
libbiojava1.7-java (1:1.7.1-1) [universe]
Java API to biological data and applications
libgeotiff-epsg (1.2.5-1) [multiverse]
the GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (2.99.1-1build1) [universe]
Molecular Modelling Library (data files)
libgofigure0 (0.8.1-2) [universe]
Tool for visualizing, processing and analysing of bioimages
libgpib-bin (3.2.11-0.2ubuntu7) [universe]
libgpib support applications and configuration
libgrib-api-data (1.8.0.1-1) [universe]
grib_api definition files
libgrits0 (0.5.1-1) [universe]
Grits is a Virtual Globe library
libhkl4 (4.0.3-4) [universe]
diffractometer computation control library
liblas-bin (1.2.1-3) [universe]
ASPRS LiDAR data translation toolset
liblinear-tools (1.8+dfsg-1) [universe]
Standalone applications for LIBLINEAR
libnecpp-dev (1.5.0+cvs20101003-2.1) [universe]
development files for libnecpp
libnecpp0 (1.5.0+cvs20101003-2.1) [universe]
library to use NEC2++
libocas-tools (0.93-1) [universe]
Standalone applications implementing the OCAS solver
libqgis1.4.0 (1.4.0+12730-5ubuntu2) [universe]
Quantum GIS - shared libraries
librsl1 (1.42-1) [universe]
TRMM Radar Software Library
libsilo-bin (4.8-4) [universe]
Utilities to manipulate libsilo files
libsquizz (0.99a-1) [universe]
Conversion libs used by squizz
libstxxl1 (1.3.1-1) [universe]
C++ STL drop-in replacement for extremely large datasets
libworldwind-java (0.5.0-8) [multiverse]
3D Virtual Globe
libxy-bin (0.8-1) [universe]
xylib - utilities
loki (2.4.7.4-4) [universe]
MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-4) [universe]
Postscript manual for loki
lutefisk (1.0.5a.cleaned-1) [universe]
de novo interpretation of peptide CID spectra
mafft (6.850-1) [universe]
Multiple alignment program for amino acid or nucleotide sequences
maq (0.7.1-4) [universe]
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-1) [universe]
graphical read alignment viewer for short gene sequences
massxpert (3.0.0-1) [universe]
linear polymer mass spectrometry software
massxpert-data (3.0.0-1) [universe]
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.1-1) [multiverse]
IO library for the GDF -- Matlab interface
maude (2.6-1) [universe]
A high-performance logical framework.
mayavi2 (4.0.0-1ubuntu1) [universe]
scientific visualization package for 2-D and 3-D data
mbt (3.2.5-3.1) [universe]
memory-based tagger-generator and tagger for natural language processing
mbtserver (0.2-1) [universe]
Server extensions for the MBT tagger
meep (1.1.1-6build1) [universe]
software package for FDTD simulation
meep-mpi (1.1.1-6build1) [universe]
software package for FDTD simulation, parallel (mpich) version
meep-mpich (1.1.1-9build1) [universe]
software package for FDTD simulation, parallel (mpich) version
meep-openmpi (1.1.1-7build1) [universe]
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3c-1) [universe]
compute the melting temperature of nucleic acid duplex
melting-gui (4.3c-1) [universe]
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.17.2-4) [universe]
map editor for OpenStreetMap.org
mgltools-bhtree (1.5.6~rc1+cvs.20110617-1) [multiverse]
Bhtree library extension module
mgltools-dejavu (1.5.6~rc1+cvs.20110617-1) [multiverse]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.6~rc1+cvs.20110617-1) [multiverse]
Python library for geometric analyses
mgltools-mglutil (1.5.6~rc1+cvs.20110617-1) [multiverse]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.6~rc1+cvs.20110617-1) [multiverse]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.6~rc1+cvs.20110617-1) [multiverse]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.6~rc1+cvs.20110625-1ubuntu2) [multiverse]
Opengltk Python extension
mgltools-pmv (1.5.6~rc1+cvs.20110617-1) [multiverse]
Python-based Molecular Viewer
mgltools-pyautodock (1.5.6~rc1+cvs.20110617-1) [multiverse]
Python implementation of autodock
mgltools-pybabel (1.5.6~rc1+cvs.20110617-1) [multiverse]
molecular structure file access and interpretation
mgltools-pyglf (1.5.6~rc1+cvs.20110617-1) [multiverse]
GLF library Python extension to write text in OpenGL
mgltools-scenario (1.5.4.cvs.20090514-1) [multiverse]
Python-based viewer of molecular structures
mgltools-sff (1.5.6~rc1+cvs.20110617-1) [multiverse]
Simple Force Field for Python
mgltools-support (1.5.6~rc1+cvs.20110617-1) [multiverse]
Update mechanism of MGLTools
mgltools-symserv (1.5.6~rc1+cvs.20110617-1) [multiverse]
Symetry server
mgltools-utpackages (1.5.6~rc1+cvs.20110617-1) [multiverse]
UT Austin software Python extensions
mgltools-viewerframework (1.5.6~rc1+cvs.20110617-2) [multiverse]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.6~rc1+cvs.20110625-1) [multiverse]
Python-based Visual Programming Environment
mgltools-volume (1.5.6~rc1+cvs.20110617-1) [multiverse]
Volume rendering Python package
minc-tools (2.1.00-1) [universe]
MNI medical image format tools
minisat (1:2.2.1-2) [universe]
Fast and lightweight SAT solver
minisat2 (1:2.2.1-2) [universe]
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-3) [universe]
Tools to store PCR-derived data
mlv-smile (1.47-1) [universe]
Find statistically significant patterns in sequences
mmass (3.11.0-3) [universe]
Mass spectrometry tool for proteomics
mmass-modules (3.11.0-3) [universe]
Mass spectrometry tool for proteomics - extension modules
montecarlo-base (20061220+dfsg3-1build1) [universe]
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-1build1) [universe]
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-4build1) [universe]
Semi-empirical Quantum Chemistry Library (binaries)
mothur (1.18.1-1) [universe]
sequence analysis suite for research on microbiota
mpb (1.4.2-16build1) [universe]
MIT Photonic-Bands
mpb-mpi (1.4.2-16build1) [universe]
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.3.1-7ubuntu1) [universe]
The Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-7ubuntu1) [universe]
The Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-7ubuntu1) [universe]
Support programs and tools for MPQC
mrbayes-mpi (3.1.2-2) [universe]
Bayesian Inference of Phylogeny - mpi version
mriconvert (2.0.216-1) [universe]
medical image file conversion utility
mricron (0.20110413.1~dfsg.1-1) [universe]
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20110413.1~dfsg.1-1) [universe]
data files for MRIcron
mrpt-apps (1:0.9.4-1ubuntu2) [universe]
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (1:0.9.4-1ubuntu2) [universe]
Mobile Robot Programming Toolkit - All the libraries
mrtrix (0.2.9-1) [universe]
diffusion-weighted MRI white matter tractography
mssstest (3.0-2) [multiverse]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.22~dfsg-2) [universe]
Efficient sequence alignment of full genomes
muscle (3.70+fix1-2) [universe]
Multiple alignment program of protein sequences
music-bin (1.0.7-1.1) [universe]
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-1) [universe]
multiple structural alignment of proteins
mustang-testdata (3.2.1-1) [universe]
multiple structural alignment of proteins, test data
narval-generic-actors (1.10.2-2ubuntu1) [universe]
An Ada framework for Distributed Acquisition Systems (generic actors)
narval-servers (1.10.2-2ubuntu1) [universe]
An Ada framework for Distributed Acquisition Systems (servers)
narval-tests-actors (1.10.2-2ubuntu1) [universe]
An Ada framework for Distributed Acquisition Systems (tests actors)
narval-utils (1.10.2-2ubuntu1) [universe]
An Ada framework for Distributed Acquisition Systems (utils)
ncbi-blast+ (2.2.25-3ubuntu1) [universe]
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.25-3ubuntu1) [universe]
NCBI Blast legacy call script
ncbi-epcr (2.3.12-2) [universe]
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20100808-2) [universe]
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin (6.1.20100808-2) [universe]
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20100808-2) [universe]
NCBI libraries for biology applications (X-based utilities)
ncoils (2002-2) [universe]
coiled coil secondary structure prediction
ncview (1.93g-1build1) [universe]
A X11 visual browser for NetCDF format files
necpp (1.5.0+cvs20101003-2.1) [universe]
NEC2 Evolution Antenna Modelling System
netcdf-bin (1:4.1.1-5build2) [universe]
Programs for reading and writing NetCDF files
njplot (2.3-3) [universe]
A phylogenetic tree drawing program
nwchem (6.0-1) [universe]
High-performance computational chemistry software
nwchem-data (6.0-1) [universe]
High-performance computational chemistry software
oasis3 (3.3.beta.dfsg.1-5build1) [universe]
Coupler for exchanging fields between components of Earth system models
oasis3-examples (3.3.beta.dfsg.1-5build1) [universe]
Example models for the OASIS climate model coupler
obdgpslogger (0.16-1.1) [universe]
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2) [universe]
Free Objects for Xtallography
octave-biosig (0.96.3+svn2677-2) [universe]
Octave bindings for BioSig library
octave-gdf (0.1.1-1) [universe]
IO library for the GDF -- Octave interface
ogdi-bin (3.2.0~beta2-7) [universe]
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.0+dfsg-2ubuntu1) [universe]
Chemical toolbox utilities (cli)
opencascade-draw (6.5.0.dfsg-2) [universe]
OpenCASCADE CAE platform shared library
openmx (3.2.4.dfsg-3build2) [universe]
Package for nano-scale material simulations
openrocket (1.1.6-1) [universe]
Model Rocket Simulator
openturns-examples (0.15-2) [universe]
examples of OpenTURNS functionalities
openturns-validation (0.15-2) [universe]
validation files for OpenTURNS
openturns-wrapper (0.15-2) [universe]
example of a wrapper for OpenTURNS
openuniverse (1.0beta3.1+dfsg-1build1) [universe]
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-1build1) [universe]
3D Universe Simulator data files
opj2dat (20080225-2ubuntu2) [universe]
OriginLab Origin project files to data files converter
opticalraytracer (2.8-2) [universe]
A virtual lens design workshop
origami (0.7.4-1) [universe]
command-line management tool for Folding @ Home clients
ossim-core (1.7.21-3ubuntu1) [universe]
The OSSIM core utilities
ovito (0.9.2-1build2) [universe]
visualization and analysis tool for atomistic simulation data
paje.app (1.97+cvs20080110-2build4) [universe]
generic visualization tool (Gantt chart and more)
paraview (3.10.1-6) [universe]
Parallel Visualization Application
paw (1:2.14.04.dfsg.2-7ubuntu1) [universe]
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-7ubuntu1) [universe]
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-7ubuntu1) [universe]
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-7ubuntu1) [universe]
Physics Analysis Workstation examples and tests
pdb2pqr (1.7-2) [universe]
Preparation of protein structures for electrostatics calculations
perlprimer (1.1.20-1) [universe]
Graphical design of primers for PCR
perlprimer-doc (1.1.20-1) [universe]
Tutorial to perlprimer
php5-gpib (3.2.11-0.2ubuntu7) [universe]
libgpib PHP5 bindings
phylip (1:3.69-1) [multiverse]
package of programs for inferring phylogenies
phylip-doc (1:3.69-1) [multiverse]
package of programs for inferring phylogenies
phyml (2:20110526-1) [universe]
Phylogenetic estimation using Maximum Likelihood
picard-tools (1.46-1) [universe]
Command line tools to manipulate SAM and BAM files
picosat (936-2) [universe]
SAT solver with proof and core support
planets (0.1.13-12build1) [universe]
Gravitation simulation of planetary bodies
plink (1.07-1) [universe]
whole-genome association analysis toolset
poa (2.0+20060928-2) [universe]
Partial Order Alignment for multiple sequence alignment
praat (5.2.17-1) [universe]
program for speech analysis and synthesis
primer3 (2.2.3-1) [universe]
Tool to design flanking oligo nucleotides for DNA amplification
probalign (1.4-2) [universe]
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-8) [universe]
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-8) [universe]
Extra programs from the probcons package
proda (1.0-7) [universe]
multiple alignment of protein sequences
proj (4.7.0-1) [universe]
Cartographic projection filter and library (transitional package)
proj-bin (4.7.0-1) [universe]
Cartographic projection library (tools)
propka (1.7-2) [universe]
Modify the protonation state of protein structures
psi3 (3.4.0-2build1) [universe]
Quantum Chemical Program Suite
psychopy (1.65.02.dfsg-1) [universe]
environment for creating psychology stimuli in Python
pymca (4.4.1p1-2) [universe]
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.4.1p1-2) [universe]
Architecture independent data files for PyMca
pymol (1.4.1-1) [universe]
Molecular Graphics System
python-ifeffit (2:1.2.11d-7build1) [multiverse]
Python GUI interface and extensions for IFEFFIT
python-necpp (1.5.0+cvs20101003-2.1) [universe]
Python module for using NEC2++
python-nifti (0.20100607.1-3) [universe]
Python interface to the NIfTI I/O libraries
python-pyepl (1.1.0-3build2) [universe]
module for coding psychology experiments in Python
python-pyepl-common (1.1.0-3build2) [universe]
module for coding psychology experiments in Python
python-pyode (1.2.0-4+cvs20090320build1) [universe]
Python bindings for The Open Dynamics Engine
qfits-tools (6.2.0-4) [universe]
FITS manipulation tools
qgis (1.4.0+12730-5ubuntu2) [universe]
Geographic Information System (GIS)
qgis-common (1.4.0+12730-5ubuntu2) [universe]
Quantum GIS - architecture-independent data
qgis-plugin-grass (1.4.0+12730-5ubuntu2) [universe]
GRASS plugin for Quantum GIS
qgis-plugin-grass-common (1.4.0+12730-5ubuntu2) [universe]
GRASS plugin for Quantum GIS - architecture-independent data
qmc (0.94-3build1) [universe]
Quine McClusky Simplification Tool
qtdmm (0.8.13-3) [universe]
GUI for digital multimeter
r-cran-colorspace (1.0.1-1build1) [universe]
GNU R Color Space Manipulation
r-cran-epibasix (1.1-2) [universe]
GNU R Elementary Epidemiological Functions
r-cran-genetics (1.3.6-2) [universe]
GNU R package for population genetics
r-cran-haplo.stats (1.4.4-1) [universe]
GNU R package for haplotype analysis
r-cran-maptools (1:0.7-38-1) [multiverse]
GNU R Tools for reading and handling spatial objects
r-cran-msm (1.0-1) [universe]
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-qvalue (1.26.0-1) [universe]
GNU R package for Q-value estimation for FDR control
r-cran-randomforest (4.6-2-1) [universe]
GNU R package implementing the random forest classificator
r-cran-sp (1:0.9-81-1) [universe]
GNU R classes and methods for spatial data
r-cran-spc (1:0.3-1) [universe]
GNU R Statistical Process Control
r-cran-surveillance (1.2-1-3) [multiverse]
development and the evaluation of epidemiological outbreak detection algorithms
r-cran-vcd (1:1.2-11-1) [universe]
GNU R Visualizing Categorical Data
r-cran-xtable (1:1.5-6-1) [universe]
GNU R coerce data to LaTeX and HTML tables
r-other-bio3d (1.1-3-1) [universe]
GNU R package for biological structure analysis
rasmol (2.7.5-3) [universe]
Visualize biological macromolecules
rasmol-doc (2.7.5-3) [universe]
Documentation for rasmol
raster3d (3.0-2-2build1) [multiverse]
tools for generating images of proteins or other molecules
raxml (7.2.8-1) [universe]
Randomized Axelerated Maximum Likelihood of phylogenetic trees
readseq (1-8) [universe]
[Biology] Conversion between sequence formats
rnahybrid (2.1-2) [universe]
Fast and effective prediction of microRNA/target duplexes
robot-player (3.0.2+dfsg-2ubuntu2) [universe]
Networked server for robots and sensors
robot-player-dev (3.0.2+dfsg-2ubuntu2) [universe]
Networked server for robots and sensors - development package
robot-player-doc (3.0.2+dfsg-2ubuntu2) [universe]
Networked server for robots and sensors (documentation)
rocs (4:4.7.1-0ubuntu2)
graph theory IDE
saga (2.0.4+dfsg-2build1) [universe]
System for Automated Geoscientific Analyses
samtools (0.1.17-1) [universe]
processing sequence alignments in SAM and BAM formats
sat4j (2.3.0-1) [universe]
Efficient library of SAT solvers in Java
science-bci (0.13ubuntu3) [universe]
Debian Science packages for the design and use of
science-distributedcomputing (0.13ubuntu3) [universe]
Debian Science Distributed Computing packages
science-electrophysiology (0.13ubuntu3) [universe]
Debian Science packages for Electrophysiology
science-machine-learning (0.13ubuntu3) [universe]
Debian Science Machine Learning packages
science-nanoscale-physics (0.13ubuntu3) [universe]
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (0.13ubuntu3) [universe]
Debian Science Nanoscale Physics development packages
science-neuroscience-modeling (0.13ubuntu3) [universe]
Debian Science packages for modeling of neural systems
science-psychophysics (0.13ubuntu3) [universe]
Debian Science packages for Psychophysics
seaview (1:4.3.0-1ubuntu1) [multiverse]
Multiplatform interface for sequence alignment and phylogeny
seesat5 (0.90.10-1.1) [universe]
a satellite location program
seq-gen (1.3.2-1) [universe]
simulate the evolution of nucleotide or amino acid sequences
sextractor (2.4.4-1) [universe]
source extractor for astronomical images
shogun-cmdline (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-dbg (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-elwms (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-octave (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-octave-modular (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-python (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-python-modular (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
shogun-r (0.10.0-2.1ubuntu1) [universe]
Large Scale Machine Learning Toolbox
sibsim4 (0.20-1) [universe]
align expressed RNA sequences on a DNA template
sigma-align (1.1.3-1) [universe]
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-1ubuntu1) [universe]
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20030921-3) [universe]
tool for aligning cDNA and genomic DNA
simgrid (3.6.1-3ubuntu1) [universe]
Toolkit for scalable simulation of distributed applications
sixpack (1:0.68-1ubuntu1) [multiverse]
full-featured package for XAS analysis
slang-xfig (0.2.0~.35-1) [universe]
produce plots and drawings through Xfig's fig2dev in S-Lang
spass (3.7-2) [universe]
An automated theorem prover for first-order logic with equality
spatialite-bin (2.4.0~rc2-5ubuntu1) [universe]
Geospatial extension for SQLite - tools
squizz (0.99a-1) [universe]
Sequence/alignment converter
ssake (3.7-1) [universe]
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.7-1) [universe]
example data for SSAKE, a genomic assembler of short reads
staden-io-lib-utils (1.12.4-1) [universe]
programs for maniuplating DNA sequencing files
stardata-common (0.7) [universe]
Common framework to manage astronomy packages
starplot (0.95.5-4) [universe]
3-dimensional perspective star map viewer
starpu-examples (0.9.1-2) [universe]
Task scheduler for heterogeneous multicore machines - exs
stellarium (0.11.0-1) [universe]
real-time photo-realistic sky generator
stellarium-data (0.11.0-1) [universe]
Stellarium data files
stimfit (0.10.18-1) [universe]
A program for viewing and analyzing electrophysiological data
survex (1.1.16-1) [universe]
cave surveying and mapping software
survex-aven (1.1.16-1) [universe]
sophisticated cave survey viewer for Survex
survex-svxedit (1.1.16-1) [universe]
survey data editor for Survex
syrthes (3.4.3-dfsg1-4build1) [universe]
Transient thermal simulations in complex solid geometries
t-coffee (8.99-1) [universe]
Multiple Sequence Alignment
t-coffee-doc (8.99-1) [universe]
PDF and HTML accompaning documents to T-Coffee
t-coffee-examples (8.99-1) [universe]
annotated examples for the use of T-Coffee
tabix (0.2.5-1ubuntu1) [universe]
generic indexer for TAB-delimited genome position files
tcd-utils (20061127-2) [universe]
convert Tide Constituent Database (TCD) files
tessa (0.3.1-4ubuntu4) [universe]
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-4ubuntu4) [universe]
simulation of 3D optical systems using FDTD on LAM-MPI clusters
therion (5.3.8-2ubuntu1) [universe]
Cave surveying - 2D and 3D drawing software
therion-doc (5.3.8-2ubuntu1) [universe]
Documentation for Therion Cave surveying software
therion-viewer (5.3.8-2ubuntu1) [universe]
Cave surveying - 3D viewer for therion models
theseus (1.6.1-1) [universe]
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-2) [universe]
Gene detection in archea and bacteria
timbl (6.4.0-1ubuntu1) [universe]
Tilburg Memory Based Learner
timblserver (1.2-4) [universe]
Server extensions for Timbl
tm-align (20110130-2build1) [universe]
structual alignment of proteins
transcalc (0.14-5) [universe]
microwave and RF transmission line calculator
transtermhp (2.07-1) [universe]
find rho-independent transcription terminators in bacterial genomes
tree-ppuzzle (5.2-6) [universe]
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-6) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle-doc (5.2-6) [universe]
Reconstruction of phylogenetic trees by maximum likelihood
treeviewx (0.5.1+20100823-1) [universe]
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [multiverse]
High-quality 2-D mesh generator binary programs
tunnelx (20090624-2) [universe]
Cave Survey drawing software
twms (0.02w-1) [universe]
tiny web map service
ucto (0.4.3-1) [universe]
Unicode Tokenizer
ugene (1.9.1+repack-0ubuntu1) [universe]
integrated bioinformatics toolkit
ugene-data (1.9.1+repack-0ubuntu1) [universe]
required data for UGENE - integrated bioinformatics toolkit
units-filter (3.3-2) [universe]
Parser for expressions concerning physical values
v-sim (3.6.0-2build2) [universe]
Visualize atomic structures
v-sim-common (3.6.0-2build2) [universe]
Visualize atomic structures (support files)
v-sim-plugins (3.6.0-2build2) [universe]
Plugins for V_Sim (a 3D visualization package)
velvet (1.1.02~nozlibcopy-1) [universe]
Nucleic acid sequence assembler for very short reads
velvet-example (1.1.02~nozlibcopy-1) [universe]
Example data for the Velvet sequence assembler
veusz (1.10-2build1) [universe]
2D scientific plotting application with graphical interface
veusz-helpers (1.10-2build1) [universe]
Architecture-specific helper module for Veusz
viewmol (2.4.1-17build1) [universe]
A graphical front end for computational chemistry programs.
vmtk (0.9.0-4) [multiverse]
the Vascular Modeling Toolkit
vowpal-wabbit (5.0-1ubuntu2) [universe]
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1ubuntu1) [universe]
processing, statistical analysis, and display of brain imaging data
weka (3.6.0-3) [universe]
Machine learning algorithms for data mining tasks
wise (2.4.1-8ubuntu1) [universe]
comparison of biopolymers, commonly DNA and protein sequences
worldwind (0.5.0-8) [multiverse]
3D Virtual Globe
xbs (0-8) [universe]
3-d models and movies of molecules
xdrawchem (2.0-1build2) [universe]
Chemical structures and reactions editor
xflr5 (6.04.dfsg-2) [universe]
analysis tool for airfoils
xfoil (6.97.dfsg-3build1) [universe]
program for the design and analysis of subsonic airfoils
xmakemol (5.16-5ubuntu1) [universe]
A program for visualizing atomic and molecular systems
xmds (1.6.6-4) [universe]
eXtensible Multi-Dimensional Simulator
xplot (1.19-9build1) [universe]
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2) [universe]
fast tool to graph and visualize lots of data
xtide (2.11-1) [universe]
provides tide and current predictions
xtide-coastline (20020202-1) [universe]
coastline data for xtide
xtide-data (20100529-1) [universe]
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [multiverse]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.31-3) [universe]
data thief for scientists
yade (0.60.3-2) [universe]
Platform for discrete element modeling. Main optimized build
ygraph (0.16~cvs20090218-1ubuntu1) [universe]
plot and animate data sets
yorick-mira (0.9.10-2) [universe]
optical intreferometry image reconstruction within Yorick
yorick-mpy-common (2.1.06+dfsg-2ubuntu2) [universe]
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.1.06+dfsg-2ubuntu2) [universe]
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.1.06+dfsg-2ubuntu2) [universe]
Message Passing Yorick (OpenMPI build)
z88 (13.0.0+dfsg2-2ubuntu1) [universe]
Finite Element Analysis Program - runtime
zimpl (3.1.0+dfsg-1) [universe]
mathematical modeling language for optimization problems
zygrib (3.9.2-1) [universe]
Weather data visualization, GRIB file viewer
zygrib-maps (3.9.2-1) [universe]
Maps for zyGrib weather visualization
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