Software Sains di Debian Squeeze

PACKAGES

Software Packages in Debian "squeeze", Subsection science

abinit (5.3.4.dfsg-3+b1 [mips, mipsel], 5.3.4.dfsg-3 [amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc])

A package for electronic structure calculations

achilles (2-8)

An artificial life and evolution simulator

aeskulap (0.2.2b1-6+b1)

medical image viewer and DICOM network client

alien-hunter (1.7-1)

Interpolated Variable Order Motifs to identify horizontally acquired DNA

altree (1.0.1-3)

program to perform phylogeny based analyses

altree-examples (1.0.1-3)

example files for ALTree

amap-align (2.2-1)

Protein multiple alignment by sequence annealing

ants (1.9+svn532-5+b1 [armel, mips], 1.9+svn532-5 [amd64, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, s390, sparc])

advanced normalization tools for brain and image analysis

apbs (1.2.1b-1)

Adaptive Poisson Boltzmann Solver

astronomical-almanac (5.6-3)

astronomical almanac - calculate planet and star positions

autodock (4.2.3-1)

analysis of ligand binding to protein structure

autodock-test (4.2.3-1)

test files for AutoDock

autogrid (4.2.3-1)

pre-calculate binding of ligands to their receptor

autogrid-test (4.2.3-1)

test files for AutoGrid

avce00 (2.0.0-2)

Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.

avida-base (2.0b7-4.2)

Auto-adaptive genetic system for Artificial Life research

avida-qt-viewer (2.0b7-4.2)

qt viewer for avida

avida-viewer (2.0b7-4.2)

ncurses viewer for avida

avogadro (1.0.1-3+b1)

Molecular Graphics and Modelling System

avogadro-data (1.0.1-3)

Molecular Graphics and Modelling System (Data Files)

ballview (1.3.2-2+b2)

A free molecular modeling and molecular graphics tool

bauble (0.9.7-2)

biodiversity collection manager software application

bibus (1.5.1-3)

bibliographic database

bioperl (1.6.1-2)

Perl tools for computational molecular biology

bioperl-run (1.6.1-1)

Wrapper modules for BioPerl

biosquid (1.9g+cvs20050121-2)

utilities for biological sequence analysis

bist (0.5.1-1)

chemical drawing tool

bkchem (0.13.0-2)

Chemical structures editor

blast2 (1:2.2.21.20090809-2)

Basic Local Alignment Search Tool

bodr (9-1)

Blue Obelisk Data Repository

boinc-app-milkyway (0.18d-1)

Milkyway@home application for the BOINC client

boinc-app-seti (5.13+cvs20060510-7)

SETI@home application for the BOINC client

boolector (1.4.ffc2089.100608-1)

SMT solver for bit-vectors and arrays

boxshade (3.3.1-4)

Pretty-printing of multiple sequence alignments

bwa (0.5.8c-1)

Burrows-Wheeler Aligner

caret (5.6.1.3~dfsg.1-4)

Computerized Anatomical Reconstruction and Editing Toolkit

cassbeam (1.0-8)

A program for Cassegrain antenna modelling

cba (0.3.6-3)

Continuous Beam Analysis

cbflib-bin (0.7.9.1-3)

utilities to manipulate CBF files

celestia (1.6.0+dfsg-2)

A real-time visual space simulation

celestia-common (1.6.0+dfsg-2)

Datafiles for Celestia, a real-time visual space simulation

celestia-common-nonfree (1.6.0-1) [non-free]

Non-free datafiles for Celestia, a real-time visual space simulation

celestia-glut (1.6.0+dfsg-2)

A real-time visual space simulation (GLUT frontend)

cgns-convert (2.5.4-3+b1 [mipsel, sparc], 2.5.4-3 [amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390])

CFD General Notation System - Conversion tools

chemtool (1.6.12-1)

Chemical structures drawing program

clustalw (2.0.12-1) [non-free]

global multiple nucleotide or peptide sequence alignment

clustalw-mpi (0.15-1) [non-free]

MPI-distributed global sequence alignment with ClustalW

clustalx (1.83-4) [non-free]

GUI for Clustal W

code-saturne (2.0.0.rc1-5)

General purpose Computational Fluid Dynamics (CFD) software

code-saturne-bin (2.0.0.rc1-5)

General purpose Computational Fluid Dynamics (CFD) software - binaries

code-saturne-data (2.0.0.rc1-5)

General purpose Computational Fluid Dynamics (CFD) software - data

code-saturne-doc (2.0.0.rc1-5)

General purpose Computational Fluid Dynamics (CFD) software - Documentation

code-saturne-include (2.0.0.rc1-5)

General purpose Computational Fluid Dynamics (CFD) software - includes

coinor-csdp (6.1.1-1)

A software package for semidefinite programming

coinor-libcgl0 (0.55.0-1)

Cut Generator Library, a library of cutting-plane generators

coinor-libclp0 (1.12.0-2)

Coin-or linear programming solver

coinor-libcoinutils0 (2.6.4-3)

Coin-or collection of utility classes

coinor-libdylp0 (1.6.0-1)

Linear programming solver using the dynamic simplex algorithm

coinor-libflopc++0 (1.0.6-3)

Formulation of Linear Optimization Problems in C++

coinor-libosi0 (0.103.0-1)

COIN-OR Open Solver Interface

coinor-libsymphony0 (5.2.4-1)

COIN-OR solver for mixed-integer linear programs

coinor-libvol0 (1.1.7-1)

Coin-or linear programming solver

complearn-gui (1.0.7-2)

interactive 3d data mining tool and demo for universal machine learning

complearn-tools (1.1.6-1)

complearn machine-learning command-line utilities

critterding (1.0-beta12.1-1)

Evolving Artificial Life

ctsim (5.1.4-1)

Computed tomography simulator

ctsim-help (5.1.4-1)

Online help file for CTSim

dans-gdal-scripts (0.16-3)

GDAL contributed tools by Geographic Information Network of Alaska

dcmtk (3.5.4-4+b1)

The OFFIS DICOM toolkit command line utilities

dialign (2.2.1-3)

Segment-based multiple sequence alignment

dialign-tx (1.0.2-1)

Segment-based multiple sequence alignment

dialign-tx-data (1.0.2-1)

Common data files for dialign-tx

dicomnifti (2.28.14-2)

converts DICOM files into the NIfTI format

drawmap (2.5-3)

draws customized maps, using raw USGS data files

drawxtl (5.4+dfsg-5)

crystal structure viewer

dsdp (5.8-8)

Software for Semidefinite Programming

dx (1:4.4.4-3+b2)

OpenDX (IBM Visualization Data Explorer) - main package

dxsamples (4.2.0-1)

Sample programs for the OpenDX Data Explorer

e00compr (1.0.1-1)

a program to read/write Arc/Info compressed E00 files

easychem (0.6-6)

Draw high-quality molecules and 2D chemical formulas

ecs (2.0.0.rc1-3)

Code_Saturne Preprocessor

edfbrowser (1.24-1)

a viewer for biosignal storage files such as bdf and edf

elmer (5.5.0.svn.4499.dfsg-1)

finite element multiphysics suite - binaries

elmer-common (5.5.0.svn.4499.dfsg-1)

finite element multiphysics suite - architecture-independent files

emboss (6.1.0-5)

the european molecular biology open software suite

emboss-data (6.1.0-5)

data files for the EMBOSS package

emboss-explorer (2.2.0-7)

web-based GUI to EMBOSS

emboss-lib (6.1.0-5)

EMBOSS Libraries

engauge-digitizer (4.1-2)

interactively extracts numbers from bitmap graphs or maps

ent (1.1debian-1.1)

pseudorandom number sequence test program

epigrass (2.0.3-1)

scientific tool for simulations and scenario analysis in network epidemiology

etsf-io (1.0.3-2)

Binary tools to check, merge and read ETSF files

exonerate (2.2.0-2)

generic tool for pairwise sequence comparison

extrema (4.4.4.dfsg-1)

powerful visualization and data analysis tool

fastdnaml (1.2.2-9)

Tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix95-1)

A faster version of pedigree programs of Linkage

fityk (0.9.3-1)

general-purpose nonlinear curve fitting and data analysis

freecad (0.10.3247.dfsg-1)

An extensible Open Source CAx program (alpha)

freediams (0.4.2-1)

Pharmaceutical drugs prescriptor

freediams-data (0.4.2-1)

Data for pharmaceutical drugs prescriptor FreeDiams

fsl (4.1.6-4) [non-free]

Metapackage for the latest version of FSL

fsl-4.1 (4.1.6-4) [non-free]

analysis tools for FMRI, MRI and DTI brain imaging

fslview (3.1.8+4.1.6-2)

viewer for (f)MRI and DTI data

g3data (1:1.5.3-2)

extract data from scanned graphs

gabedit (2.2.12-1)

graphical user interface to Ab Initio packages

gamgi (0.14.8-1)

construct, view and analyse atomic structures

gamgi-data (0.14.8-1)

extra data for the gamgi atomic structure display program

garlic (1.6-1)

A visualization program for biomolecules

gausssum (2.2.4-1)

parse and display Gaussian, GAMESS, and etc's output

gchempaint (0.12.4-1+b1)

2D chemical structures editor for the GNOME2 desktop

gcrystal (0.12.4-1+b1)

lightweight crystal structures visualizer

gcu-bin (0.12.4-1+b1)

GNOME chemistry utils (helper applications)

gcu-plugin (0.12.4-1+b1)

GNOME chemistry utils (browser plugin)

gcx (1.3-1)

astronomical image processing and photometry gtk+ application

gdal-bin (1.6.3-4+b1)

Geospatial Data Abstraction Library - Utility programs

gdis (0.90-3)

molecular and crystal model viewer

gdis-data (0.90-3)

molecular and crystal model viewer (data files)

gdpc (2.2.5-1)

visualiser of molecular dynamic simulations

gdpc-examples (2.2.5-1)

example files for the gdpc program

gelemental (1.2.0-5)

Periodic Table viewer

gentle (1.9+cvs20100605+dfsg-2) [contrib]

suite to plan genetic cloning

geographiclib-tools (1.2-1)

A C++ library to solve some geodesic problems -- tools

geotiff-bin (1.2.5-1+b1)

the GeoTIFF library -- tools

gerris (20091109-dfsg.1-1)

Gerris Flow Solver

gff2aplot (2.0-5)

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98d-3)

produces PostScript graphical output from GFF-files

ghkl (4.0.3-2)

diffractometer computation control library

glam2 (1064-1)

gapped protein motifs from unaligned sequences

gliese (3.0.95-2) [non-free]

stellar data set from the Third Catalogue of Nearby Stars

gmap (2010-07-21-1) [non-free]

spliced and SNP-tolerant alignment for mRNA and short reads

gmt (4.5.2-1+b1)

Generic Mapping Tools

gperiodic (2.0.10-5)

periodic table application

gpiv (0.6.1-2)

GUI program for Particle Image Velocimetry

gpiv-mpi (0.6.1-2)

GUI program for Particle Image Velocimetry - MPI version

gpivtools (0.6.0-1+b1 [amd64, i386, ia64, powerpc], 0.6.0-1 [armel, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, sparc])

command line programs for Particle Image Velocimetry

gpivtools-mpi (0.6.0-1+b1 [amd64, i386, ia64, powerpc], 0.6.0-1 [armel, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, sparc])

command line programs for Particle Image Velocimetry - MPI version

gpx2shp (0.69-3)

convert GPS or GPX file to ESRI Shape file

grass (6.4.0~rc6+42329-3)

Geographic Resources Analysis Support System

gri (2.12.21-1+b1 [i386], 2.12.21-1 [amd64, armel, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

a language for scientific illustration

gromacs (4.0.7-3)

Molecular dynamics simulator, with building and analysis tools

gromacs-data (4.0.7-3)

GROMACS molecular dynamics sim, data and documentation

gromacs-lam (4.0.7-3)

Transition package to gromacs-openmpi

gromacs-mpich (4.0.7-3)

Molecular dynamics sim, binaries for MPICH parallelization

gromacs-openmpi (4.0.7-3)

Molecular dynamics sim, binaries for OpenMPI parallelization

gvb (1.2.1-1)

visual simulator of 1 and 2-dimensional vibrations

gwyddion (2.20-1)

Scanning Probe Microscopy visualization and analysis tool

gwyddion-common (2.20-1)

architecture-independent files for Gwyddion SPM analysis tool

gwyddion-plugins (2.20-1)

plugins for Gwyddion SPM analysis tool

h5utils (1.12.1-1+b1)

HDF5 files visualization tools

harminv (1.3.1-7)

extraction of complex frequencies and amplitudes from time series

hdf5-tools (1.8.4-patch1-2)

Hierarchical Data Format 5 (HDF5) - Runtime tools

hmmer (2.3.2-5)

profile hidden Markov models for protein sequence analysis

hmmer-pvm (2.3.2-5)

HMMER programs with PVM (Parallel Virtual Machine) support

hodie (1.4-8)

prints the date in latin

horae (071~svn533-1) [contrib]

interactive graphical processing and analysis of EXAFS data

hpcc (1.4.1-1)

HPC Challenge benchmark

ifeffit (2:1.2.11d-6) [contrib]

An interactive program for XAFS analysis

ifrit (3.3.2-1)

a powerful tool for visualizing 3-dimensional data sets

igv (1.5.14-1) [non-free]

Integrative Genomics Viewer

imagej (1.44c-3)

Image processing program inspired by NIH Image for the Macintosh

imview (1.1.9c-7+b1)

Image viewing and analysis application

infernal (1.0.2-1)

inference of RNA secondary structural alignments

israndom (1.0.7-3)

nonclassical randomness test using data compressors

itksnap (2.0.0+cvs20100615-1)

semi-automatic segmentation of structures in 3D images

jblas (1.1.1-2)

A fast linear algebra library for Java

jemboss (6.1.0-5)

graphical user interface to EMBOSS

kalign (2.04-2)

Global and progressive multiple sequence alignment

kalzium (4:4.4.5-2)

periodic table and chemistry tools for KDE

kalzium-data (4:4.4.5-2)

data files for Kalzium

kstars (4:4.4.5-2)

desktop planetarium for KDE

kstars-data (4:4.4.5-2)

data files for KStars desktop planetarium

last-align (128-1)

genome-scale comparison of biological sequences

libbiojava-java (1:1.7.1-1)

Java API to biological data and applications

libbiojava-java-demos (1:1.7.1-1)

Example programs for BioJava

libbiojava1.7-java (1:1.7.1-1)

Java API to biological data and applications

libgeotiff-epsg (1.2.5-1) [non-free]

the GeoTIFF library -- EPSG Geodetic Parameter Dataset

libghemical-data (2.99.1-1)

Molecular Modelling Library (data files)

libgrib-api-data (1.8.0.1-1)

grib_api definition files

liblas-bin (1.2.1-1)

ASPRS LiDAR data translation toolset

liblinear-tools (1.6+dfsg-1)

Standalone applications for LIBLINEAR

libocas-tools (0.93-1)

Standalone applications implementing the OCAS solver

libopenmeeg1 (2.0.0.dfsg-2)

library for solving EEG and MEG forward and inverse problems

libqgis1.4.0 (1.4.0+12730-5)

Quantum GIS - shared libraries

libstxxl1 (1.2.1-3)

C++ STL drop-in replacement for extremely large datasets

libxy-bin (0.6-1)

xylib - utilities

life-apps (0.9.24-7)

A library for the finite element method

lipsia (1.6.0-4)

analysis suite for MRI and fMRI data

loki (2.4.7.4-4)

MCMC linkage analysis on general pedigrees

lutefisk (1.0.5a.cleaned-1)

de novo interpretation of peptide CID spectra

mafft (6.815-1)

Multiple alignment program for amino acid or nucleotide sequences

maq (0.7.1-3+b1 [armel, ia64, powerpc], 0.7.1-3 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390, sparc])

maps short fixed-length polymorphic DNA sequence reads to reference sequences

massxpert (2.3.6-1squeeze1)

linear polymer mass spectrometry software

massxpert-data (2.3.6-1squeeze1)

linear polymer mass spectrometry software - arch-indep data

mayavi2 (3.3.2-3)

A scientific visualization package for 2-D and 3-D data

meep (1.1.1-6)

software package for FDTD simulation

meep-mpi (1.1.1-6)

software package for FDTD simulation, parallel (mpich) version

meep-mpich (1.1.1-9)

software package for FDTD simulation, parallel (mpich) version

meep-openmpi (1.1.1-7)

software package for FDTD simulation, parallel (OpenMPI) version

melting (4.3c-1)

compute the melting temperature of nucleic acid duplex

melting-gui (4.3c-1)

graphical interface to compute the melting temperature of nucleic acid duplex

merkaartor (0.16.3-1)

map editor for OpenStreetMap.org

mgltools-scenario (1.5.4.cvs.20090514-1) [non-free]

Python-based viewer of molecular structures

minc-tools (2.0.18+cvs20100518-1)

MNI medical image format tools

minisat2 (1:2.2.0-2)

Fast and lightweight SAT solver

mipe (1.1-3)

Tools to store PCR-derived data

mitools (1.8.1-3)

view, convert and perform basic maths with medical image datasets

mmass (2.4.0-4)

Mass spectrometry tool for proteomics

molphy (2.3b3-5) [non-free]

Program Package for MOLecular PHYlogenetics

mopac7-bin (1.15-4)

Semi-empirical Quantum Chemistry Library (binaries)

mozilla-biofox (1.1.5-1)

extension of bioinformatics tools to Iceape and Iceweasel browsers

mpb (1.4.2-16)

MIT Photonic-Bands

mpb-mpi (1.4.2-16)

MIT Photonic-Bands, parallel (mpich) version

mpqc (2.3.1-6)

The Massively Parallel Quantum Chemistry Program

mpqc-openmpi (2.3.1-6)

The Massively Parallel Quantum Chemistry Program (OpenMPI Version)

mpqc-support (2.3.1-6)

Support programs and tools for MPQC

mrpt-apps (1:0.9.0-2+b1)

Mobile Robot Programming Toolkit - Console and GUI applications

mrpt-libs (1:0.9.0-2+b1)

Mobile Robot Programming Toolkit - All the libraries

mrtrix (0.2.8-3)

diffusion-weighted MRI white matter tractography

mssstest (3.0-2) [non-free]

Normalisation of disease scores for patients with Multiple Sclerosis

mummer (3.22~dfsg-2)

Efficient sequence alignment of full genomes

muscle (3.70+fix1-2)

Multiple alignment program of protein sequences

music-bin (1.0.7-1)

Multi-Simulation Coordinator for MPI -- Utilities

mustang (3.2.1-1)

multiple structural alignment of proteins

mustang-testdata (3.2.1-1)

multiple structural alignment of proteins, test data

narval-generic-actors (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (generic actors)

narval-servers (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (servers)

narval-tests-actors (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (tests actors)

narval-utils (1.10.2-2)

An Ada framework for Distributed Acquisition Systems (utils)

ncbi-epcr (2.3.12-1)

Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-rrna-data (6.1.20090809-2)

large rRNA BLAST databases distributed with the NCBI toolkit

ncbi-tools-bin (6.1.20090809-2)

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20090809-2)

NCBI libraries for biology applications (X-based utilities)

nco (4.0.2-1)

command-line operators to analyze netCDF files

ncoils (2002-1)

[Biology] coiled coil secondary structure prediction

ncview (1.93g-1+b2 [armel, i386, ia64], 1.93g-1+b1 [amd64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

A X11 visual browser for NetCDF format files

netcdf-bin (1:4.1.1-5)

Programs for reading and writing NetCDF files

njplot (2.3-2)

A phylogenetic tree drawing program

oasis3 (3.3.beta.dfsg.1-5)

Coupler for exchanging fields between components of Earth system models

oasis3-examples (3.3.beta.dfsg.1-5)

Example models for the OASIS climate model coupler

objcryst-fox (1.9.0.2-1)

Free Objects for Xtallography

odin (1.8.1-3)

develop, simulate and run magnetic resonance sequences

ogdi-bin (3.2.0~beta2-6)

Open Geographic Datastore Interface Library -- utilities

openbabel (2.2.3-1+b2 [armel, ia64], 2.2.3-1+b1 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

Chemical toolbox utilities

opencascade-draw (6.3.0.dfsg.1-6)

OpenCASCADE CAE platform shared library

opencascade-wok (6.3.0.dfsg.1-6)

OpenCASCADE CAE platform shared library

openmeeg-tools (2.0.0.dfsg-2)

tools for solving EEG and MEG forward and inverse problems

openmx (3.2.4.dfsg-3)

Package for nano-scale material simulations

openrocket (1.1.0-2)

Model Rocket Simulator

openturns-examples (0.13.2-8+b1 [amd64], 0.13.2-8 [armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

examples of OpenTURNS functionalities

openturns-validation (0.13.2-8)

validation files for OpenTURNS

openturns-wrapper (0.13.2-8+b1 [amd64], 0.13.2-8 [armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

example of a wrapper for OpenTURNS

openuniverse (1.0beta3.1+dfsg-1+b2 [amd64, armel, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.0beta3.1+dfsg-1+b1 [kfreebsd-amd64, kfreebsd-i386])

3D Universe Simulator

openuniverse-common (1.0beta3.1+dfsg-1)

3D Universe Simulator data files

opj2dat (20080225-2)

OriginLab Origin project files to data files converter

opticalraytracer (2.8-2)

A virtual lens design workshop

ossim-core (1.7.21-1+b1)

The OSSIM core utilities

paraview (3.8.0-1+b1 [amd64], 3.8.0-1 [armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc])

dynamic libraries for Paraview

perlprimer (1.1.19-1)

Graphical design of primers for PCR

phylip (1:3.69-1) [non-free]

package of programs for inferring phylogenies

phyml (2:20100123-1)

Phylogenetic estimation using Maximum Likelihood

picard-tools (1.27-1)

Command line tools to manipulate SAM and BAM files

picosat (913-4)

SAT solver with proof and core support

planets (0.1.13-11)

Gravitation simulation of planetary bodies

plink (1.07-1)

whole-genome association analysis toolset

poa (2.0+20060928-2)

Partial Order Alignment for multiple sequence alignment

praat (5.1.42-1)

program for speech analysis and synthesis

primer3 (1.1.4-1)

Tool to design flanking oligo nucleotides for DNA amplification

probcons (1.12-4)

PROBabilistic CONSistency-based multiple sequence alignment

probcons-extra (1.12-4)

Extra programs from the probcons package

proda (1.0-7)

multiple alignment of protein sequences

proj (4.7.0-1)

Cartographic projection filter and library (transitional package)

proj-bin (4.7.0-1)

Cartographic projection library (tools)

psi3 (3.4.0-2)

Quantum Chemical Program Suite

psychopy (1.61.03.dfsg-1)

environment for creating psychology stimuli in Python

pymol (1.2r2-1.1+b1)

Molecular Graphics System

qfits-tools (6.2.0-2)

FITS manipulation tools

qgis (1.4.0+12730-5)

Geographic Information System (GIS)

qgis-common (1.4.0+12730-5)

Quantum GIS - architecture-independent data

qgis-plugin-grass (1.4.0+12730-5)

GRASS plugin for Quantum GIS

qgis-plugin-grass-common (1.4.0+12730-5)

GRASS plugin for Quantum GIS - architecture-independent data

qmc (0.94-3+b1 [i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.94-3 [amd64, armel, kfreebsd-amd64, kfreebsd-i386])

Quine McClusky Simplification Tool

qsearch-tools (1.0.8-3)

qsearch machine-learning command-line utilities

qtdmm (0.8.13-3)

GUI for digital multimeter

rasmol (2.7.5-1)

Visualize biological macromolecules

raster3d (2.9-1-1+b1 [amd64, i386, ia64, mips, mipsel, s390, sparc], 2.9-1-1 [armel, powerpc]) [non-free]

tools for generating images of proteins or other molecules

readseq (1-8)

[Biology] Conversion between sequence formats

rnahybrid (2.1-2)

Fast and effective prediction of microRNA/target duplexes

saga (2.0.4+dfsg-2)

System for Automated Geoscientific Analyses

samtools (0.1.8-1)

processing sequence alignments in SAM and BAM formats

sat4j (2.2.0-3)

Efficient library of SAT solvers in Java

science-astronomy (0.12)

Debian Science Astronomy packages

science-astronomy-dev (0.12)

Debian Science Astronomy-dev packages

science-biology (0.12)

Debian Science Biology packages

science-chemistry (0.12)

Debian Science Chemistry packages

science-config (0.12)

Debian Science Project config package

science-dataacquisition (0.12)

Debian Science data acquisition packages

science-electronics (0.12)

Debian Science Electronics packages

science-engineering (0.12)

Debian Science Engineering packages

science-engineering-dev (0.12)

Debian Science Engineering-dev packages

science-geography (0.12)

Debian Science Geography packages

science-imageanalysis (0.12)

Debian Science image analysis packages

science-linguistics (0.12)

Debian Science Linguistics packages

science-machine-learning (0.12)

Debian Science Machine Learning packages

science-mathematics (0.12)

Debian Science Mathematics packages

science-mathematics-dev (0.12)

Debian Science Mathematics-dev packages

science-meteorology (0.12)

Debian Science Meteorology packages

science-meteorology-dev (0.12)

Debian Science Meteorology-dev packages

science-nanoscale-physics (0.12)

Debian Science Nanoscale Physics packages

science-nanoscale-physics-dev (0.12)

Debian Science Nanoscale Physics development packages

science-neuroscience-cognitive (0.12)

Debian Science packages for Cognitive Neuroscience

science-numericalcomputation (0.12)

Debian Science Numerical Computation packages

science-physics (0.12)

Debian Science Physics packages

science-robotics (0.12)

Debian Robotics packages

science-statistics (0.12)

Debian Science Statistics packages

science-tasks (0.12)

Debian Science tasks for tasksel

science-typesetting (0.12)

Debian Science typesetting packages

science-viewing (0.12)

Debian Science data visualisation packages

seaview (1:4.2.5-1) [non-free]

Multiplatform interface for sequence alignment and phylogeny

seesat5 (0.90.10-1.1)

a satellite location program

seqan-apps (1.2-1)

A C++ template library for the analysis of sequences

sextractor (2.4.4-1)

source extractor for astronomical images

shogun-cmdline (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-elwms (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-octave (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-octave-modular (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-python (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-python-modular (0.9.3-4)

Large Scale Machine Learning Toolbox

shogun-r (0.9.3-4)

Large Scale Machine Learning Toolbox

sibsim4 (0.20-1)

align expressed RNA sequences on a DNA template

sigma-align (1.1.3-1)

Simple greedy multiple alignment of non-coding DNA sequences

sim4 (0.0.20030921-3)

tool for aligning cDNA and genomic DNA

sixpack (1:0.66-3) [contrib]

full-featured package for XAS analysis

slang-xfig (0.2.0~.35-1)

produce plots and drawings through Xfig's fig2dev in S-Lang

spass (3.7-2)

An automated theorem prover for first-order logic with equality

spatialite-bin (2.4.0~rc2-5)

Geospatial extension for SQLite - tools

ssake (3.5-1)

genomics application for assembling millions of very short DNA sequences

ssake-examples (3.5-1)

example data for SSAKE, a genomic assembler of short reads

staden-io-lib-utils (1.12.4-1)

programs for maniuplating DNA sequencing files

stardata-common (0.7)

Common framework to manage astronomy packages

starplot (0.95.5-4)

3-dimensional perspective star map viewer

stellarium (0.10.5-1)

real-time photo-realistic sky generator

stellarium-data (0.10.5-1)

Stellarium data files

step (4:4.4.5-2)

interactive physical simulator for KDE

survex (1.1.14-1)

cave surveying and mapping software

survex-aven (1.1.14-1)

sophisticated cave survey viewer for Survex

survex-svxedit (1.1.14-1)

survey data editor for Survex

syrthes (3.4.2-dfsg1-3)

Transient thermal simulations in complex solid geometries

t-coffee (8.84-1)

Multiple Sequence Alignment

t-coffee-examples (8.84-1)

annotated examples for the use of T-Coffee

tcd-utils (20061127-2)

convert Tide Constituent Database (TCD) files

tessa (0.3.1-4+b4)

simulation of 3D optical systems with the FDTD method

tessa-mpi (0.3.1-4+b4)

simulation of 3D optical systems using FDTD on LAM-MPI clusters

therion (5.3.3-1)

Cave surveying - 2D and 3D drawing software

therion-viewer (5.3.3-1)

Cave surveying - 3D viewer for therion models

theseus (1.4.3-2)

superimpose macromolecules using maximum likelihood

tigr-glimmer (3.02-2)

Gene detection in archea and bacteria

transcalc (0.14-5)

microwave and RF transmission line calculator

tree-ppuzzle (5.2-5)

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.2-5)

Reconstruction of phylogenetic trees by maximum likelihood

treeviewx (0.5.1-7)

Displays and prints phylogenetic trees

triangle-bin (1.6-2) [non-free]

High-quality 2-D mesh generator binary programs

tunnelx (20090624-2)

Cave Survey drawing software

udav (0.5.2-1+b2 [amd64, ia64, kfreebsd-amd64, kfreebsd-i386, mips], 0.5.2-1+b1 [armel, i386, mipsel, powerpc, s390, sparc])

application for data visualization based on MathGL

units-filter (3.0-1)

Parser for expressions concerning physical values

urg-utils (0.8.11-1)

utilities for Hokuyo URG/UTM laser range scanners

v-sim (3.5.1-1+b1)

Visualize atomic structures

v-sim-common (3.5.1-1)

Visualize atomic structures (support files)

v-sim-plugins (3.5.1-1+b1)

Plugins for V_Sim (a 3D visualization package)

velvet (1.0.02~nozlibcopy-1)

Nucleic acid sequence assembler for very short reads

velvet-example (1.0.02~nozlibcopy-1)

Example data for the Velvet sequence assembler

via-bin (1.6.0-3)

tools for volumetric image analysis

viewmol (2.4.1-15+b1)

A graphical front end for computational chemistry programs.

vowpal-wabbit (4.1+20100420-1+b1 [amd64], 4.1+20100420-1 [armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390])

fast and scalable online learning algorithm

voxbo (1.8.5~svn1172-1)

processing, statistical analysis, and display of brain imaging data

weka (3.6.0-3)

Machine learning algorithms for data mining tasks

wise (2.4.1-8)

comparison of biopolymers, commonly DNA and protein sequences

worldwind (0.5.0-8) [non-free]

3D Virtual Globe

xbs (0-8)

3-d models and movies of molecules

xdrawchem (1.9.9-4.1)

Chemical structures and reactions editor

xfoil (6.97.dfsg-3)

program for the design and analysis of subsonic airfoils

xmakemol (5.16-5)

A program for visualizing atomic and molecular systems

xmakemol-gl (5.16-5)

A program for visualizing atomic and molecular systems (OpenGL)

xmds (1.6.6-4)

eXtensible Multi-Dimensional Simulator

xorsa (0.7.0-15)

tool for Celestial Mechanics investigations

xplot (1.19-9+b1 [powerpc, s390], 1.19-9 [amd64, armel, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])

simple on-screen x-y column data plotter

xplot-xplot.org (0.90.7.1-2)

fast tool to graph and visualize lots of data

xtide (2.10-2)

provides tide and current predictions

xtide-coastline (20020202-1)

coastline data for xtide

xtide-data (20100529-1)

Harmonics data for xtide

xtide-data-nonfree (20100529-1) [non-free]

Harmonics data for xtide (Canada, Netherlands, Germany and UK)

yale (5.0.95-2) [non-free]

stellar data set from the Yale Bright Star Catalog

ygraph (0.16~cvs20090218-1+b1)

plot and animate data sets

yorick (2.1.06+dfsg-2)

interpreted language and scientific graphics

yorick-cubeview (1.5-1)

a 3D FITS data viewer specialized in spectro-imaging

yorick-curses (0.1-4)

interface to the (n)curses library for the Yorick language

yorick-data (2.1.06+dfsg-2)

interpreted library for the Yorick language

yorick-dev (2.1.06+dfsg-2)

development files for the Yorick interpreted language

yorick-gl (1.1+cvs20070922+dfsg-3)

OpenGL 3D graphics support for the Yorick language

yorick-hdf5 (0.8.0-1+b1)

Hierarchical Data Format 5 interface for the Yorick language

yorick-imutil (0.5.5-1)

fast image manipulation routines for the Yorick language

yorick-mira (0.9.9+dfsg1-2)

optical intreferometry image reconstruction within Yorick

yorick-ml4 (0.6.0-1)

Matlab file format support for the Yorick language

yorick-mpy-common (2.1.06+dfsg-2)

Message Passing Yorick (common files)

yorick-mpy-mpich2 (2.1.06+dfsg-2)

Message Passing Yorick (MPICH2 build)

yorick-mpy-openmpi (2.1.06+dfsg-2)

Message Passing Yorick (OpenMPI build)

yorick-optimpack (1.3.1+dfsg1-1)

optimization of large scale problems for the Yorick language

yorick-soy (1.2.01-2+b1 [kfreebsd-i386], 1.2.01-2 [amd64, armel, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc])

sparse matrix operations for the Yorick language

yorick-spydr (0.8.1-1)

FITS image display and simple analysis

yorick-yao (4.5.1-1)

a Yorick-based adaptive optics system simulator

yorick-yeti (6.3.1-1)

utility plugin for the Yorick language

yorick-yeti-fftw (6.3.1-1)

FFT plugin for the Yorick language

yorick-yeti-gsl (6.3.1-1)

GSL special functions plugin for the Yorick language

yorick-yeti-regex (6.3.1-1)

POSIX regular expressions for the Yorick language

yorick-yeti-tiff (6.3.1-1)

TIFF image format input for the Yorick language

yorick-yutils (1.5.0-1)

various utilities for the Yorick language

yorick-z (1.2.0+cvs20080115-1+b2 [kfreebsd-i386], 1.2.0+cvs20080115-1+b1 [amd64, armel, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc])

zlib, jpeg and png support for the Yorick language

z88 (13.0.0+dfsg2-1)

Finite Element Analysis Program - runtime

z88-data (13.0.0+dfsg2-1)

Finite Element Analysis Program - data

zimpl (3.0.0+dfsg1-4)

mathematical modeling language for optimization problems